Variant report

Variant	rs72954036
Chromosome Location	chr1:85179856-85179857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85155315..85160651-chr1:85179679..85182911,5	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

rs_ID	r²[population]
rs10874456	0.88[EUR][1000 genomes]
rs10874457	0.92[EUR][1000 genomes]
rs1340524	0.92[EUR][1000 genomes]
rs1538848	0.84[EUR][1000 genomes]
rs17376391	0.90[EUR][1000 genomes]
rs2911560	0.85[EUR][1000 genomes]
rs2911569	0.85[EUR][1000 genomes]
rs2911572	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2911580	1.00[EUR][1000 genomes]
rs2911582	1.00[EUR][1000 genomes]
rs2911612	0.83[EUR][1000 genomes]
rs2943662	0.83[EUR][1000 genomes]
rs2994436	0.85[EUR][1000 genomes]
rs2994438	0.85[EUR][1000 genomes]
rs2994441	0.85[EUR][1000 genomes]
rs2994442	0.85[EUR][1000 genomes]
rs2994444	0.81[EUR][1000 genomes]
rs2994445	0.83[EUR][1000 genomes]
rs2994609	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2994939	0.85[EUR][1000 genomes]
rs2994945	0.83[EUR][1000 genomes]
rs2994950	0.85[EUR][1000 genomes]
rs3021456	0.85[EUR][1000 genomes]
rs4434855	0.90[EUR][1000 genomes]
rs4907090	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6576719	0.92[EUR][1000 genomes]
rs6576720	0.92[EUR][1000 genomes]
rs7527484	0.90[EUR][1000 genomes]
rs7535997	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7536257	0.83[EUR][1000 genomes]
rs7546691	0.85[EUR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
2	chr1:85174000-85180400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:85175000-85184200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:85176000-85181400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:85176200-85181200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:85177000-85181000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:85177000-85183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:85177200-85181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:85177200-85181800	Enhancers	Fetal Brain Male	brain
10	chr1:85177800-85180000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:85178000-85185200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:85178400-85180800	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:85178400-85181200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:85178600-85181200	Weak transcription	Stomach Mucosa	stomach
15	chr1:85178600-85185000	Weak transcription	NH-A	brain
16	chr1:85178800-85181200	Weak transcription	K562	blood
17	chr1:85178800-85184600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:85178800-85184800	Weak transcription	NHLF	lung
19	chr1:85178800-85185600	Weak transcription	Osteobl	bone
20	chr1:85179000-85181200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:85179600-85182200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:85179600-85182200	Enhancers	Fetal Brain Female	brain
23	chr1:85179600-85185000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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