Variant report

Variant	rs1340527
Chromosome Location	chr1:85172435-85172436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85157179..85159526-chr1:85171730..85173430,2	K562	blood:
2	chr1:85169638..85172472-chr1:85176220..85177885,2	K562	blood:
3	chr1:85151664..85154712-chr1:85171325..85174497,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11578078	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12022113	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12120614	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12123923	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs12125951	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs12127432	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs1340528	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298076	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2911567	0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs2911571	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911575	1.00[ASN][1000 genomes]
rs2911578	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911583	0.97[ASN][1000 genomes]
rs2911611	0.93[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2943672	0.93[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2994429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994437	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2994439	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2994440	0.92[ASN][1000 genomes]
rs2994449	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2994941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2994949	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3096445	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs3768238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3782	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs4390189	1.00[ASN][1000 genomes]
rs4551615	1.00[ASN][1000 genomes]
rs56681543	0.98[ASN][1000 genomes]
rs6576722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6576723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6670415	0.99[ASN][1000 genomes]
rs6670434	0.94[ASN][1000 genomes]
rs6682889	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687220	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7524511	0.85[JPT][hapmap]
rs818525	0.83[ASN][1000 genomes]
rs9661716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9662145	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1340527	Y_RNA	cis	lung	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:85166200-85173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:85167600-85173800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:85167600-85177000	Weak transcription	Aorta	Aorta
5	chr1:85168400-85176800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:85168600-85175400	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:85168600-85176400	Weak transcription	Fetal Stomach	stomach
8	chr1:85169600-85172800	Enhancers	Fetal Intestine Small	intestine
9	chr1:85169600-85175000	Enhancers	Fetal Intestine Large	intestine
10	chr1:85170000-85177400	Weak transcription	Fetal Brain Female	brain
11	chr1:85171400-85176800	Weak transcription	Fetal Lung	lung
12	chr1:85171600-85174200	Weak transcription	K562	blood
13	chr1:85171600-85177000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney

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