Variant report

Variant	rs4551615
Chromosome Location	chr1:85169422-85169423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85153044..85155913-chr1:85168206..85170903,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1093622	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1102838	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11578078	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12022113	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12095186	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12120614	0.97[ASN][1000 genomes]
rs12123923	0.89[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs12125951	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs12127432	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs1340527	1.00[ASN][1000 genomes]
rs1340528	1.00[ASN][1000 genomes]
rs2298076	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2911567	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs2911571	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2911575	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2911578	1.00[ASN][1000 genomes]
rs2911583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2911611	0.92[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2943672	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2994429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2994437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2994439	0.92[ASN][1000 genomes]
rs2994440	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2994449	0.98[ASN][1000 genomes]
rs2994941	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2994949	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs3096445	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3768238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4390189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56681543	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576722	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6576723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6670415	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6670434	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6682889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[ASN][1000 genomes]
rs6687220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs7524511	0.85[JPT][hapmap]
rs818525	0.83[ASN][1000 genomes]
rs9661716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9662145	0.87[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85164800-85169600	Weak transcription	Fetal Lung	lung
2	chr1:85164800-85170200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:85164800-85170800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:85164800-85170800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:85164800-85171000	Weak transcription	Fetal Kidney	kidney
6	chr1:85165000-85169600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:85165200-85170200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:85166200-85169600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:85166200-85170200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:85166200-85170600	Weak transcription	K562	blood
12	chr1:85166200-85173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:85166400-85169600	Weak transcription	Fetal Intestine Small	intestine
14	chr1:85166400-85170200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:85166400-85170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:85167400-85169600	Weak transcription	Primary B cells from cord blood	blood
17	chr1:85167600-85169800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:85167600-85171400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:85167600-85173800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:85167600-85177000	Weak transcription	Aorta	Aorta
21	chr1:85167800-85170000	Enhancers	Fetal Brain Female	brain
22	chr1:85168400-85176800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:85168600-85169600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:85168600-85169800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:85168600-85170000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:85168600-85170200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:85168600-85170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:85168600-85170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:85168600-85171400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:85168600-85175400	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:85168600-85176400	Weak transcription	Fetal Stomach	stomach
32	chr1:85168800-85169600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:85168800-85169600	Weak transcription	Fetal Brain Male	brain
34	chr1:85168800-85170000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr1:85168800-85170200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr1:85169200-85170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:85169200-85170800	Weak transcription	Placenta	Placenta
38	chr1:85169400-85170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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