Variant report

Variant	rs3782
Chromosome Location	chr1:85110325-85110326
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85108867..85111108-chr1:85154777..85157109,2	MCF-7	breast:
2	chr1:85087799..85089777-chr1:85107656..85110506,2	K562	blood:
3	chr1:85107451..85110887-chr1:85114026..85115969,4	K562	blood:
4	chr1:85105975..85107759-chr1:85109994..85111920,2	K562	blood:
5	chr1:85107610..85110415-chr1:85125132..85127856,2	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11578078	0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs12022113	0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12120614	0.89[ASN][1000 genomes]
rs12123923	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12125951	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12127432	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1340527	0.90[ASN][1000 genomes]
rs1340528	0.90[ASN][1000 genomes]
rs2298076	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs2911567	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2911571	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2911575	0.90[ASN][1000 genomes]
rs2911578	0.90[ASN][1000 genomes]
rs2911583	0.87[ASN][1000 genomes]
rs2911611	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2943672	0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs2994429	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2994437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2994439	0.98[ASN][1000 genomes]
rs2994440	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2994449	0.88[ASN][1000 genomes]
rs2994941	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994949	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs3096445	0.80[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.81[LWK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4390189	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4551615	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56681543	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6576722	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.89[ASN][1000 genomes]
rs6576723	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6670415	0.91[ASN][1000 genomes]
rs6670434	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6682889	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6687220	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9661716	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs9662145	0.80[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85099000-85115600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:85099000-85123400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:85099200-85115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:85099200-85121400	Weak transcription	NHDF-Ad	bronchial
6	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:85099400-85115000	Weak transcription	Osteobl	bone
8	chr1:85099400-85131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:85099600-85122600	Weak transcription	Fetal Brain Male	brain
10	chr1:85100600-85112400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:85100600-85116800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:85101000-85123200	Weak transcription	Fetal Kidney	kidney
13	chr1:85101000-85124400	Weak transcription	Hela-S3	cervix
14	chr1:85101600-85121000	Weak transcription	Placenta	Placenta
15	chr1:85103000-85115000	Weak transcription	HMEC	breast
16	chr1:85104600-85116000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:85104800-85111600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:85105000-85119000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:85105800-85115000	Weak transcription	Small Intestine	intestine
20	chr1:85106000-85110800	Weak transcription	Fetal Thymus	thymus
21	chr1:85106000-85116600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:85106200-85112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:85106200-85115000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:85106200-85140400	Weak transcription	NHEK	skin
25	chr1:85106400-85114800	Weak transcription	Fetal Brain Female	brain
26	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:85106600-85114800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr1:85106600-85116800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:85107600-85114800	Weak transcription	Primary B cells from cord blood	blood
30	chr1:85107600-85115000	Weak transcription	Primary T cells from cord blood	blood
31	chr1:85107800-85115400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:85108000-85110800	Weak transcription	HSMM	muscle
33	chr1:85108000-85123200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:85108200-85111200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:85108200-85111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:85108200-85112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:85108200-85115000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:85108200-85119000	Weak transcription	Right Ventricle	heart
40	chr1:85108200-85123400	Weak transcription	Esophagus	oesophagus
41	chr1:85108200-85128800	Weak transcription	GM12878-XiMat	blood
42	chr1:85108400-85115000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:85108400-85115200	Weak transcription	Brain Anterior Caudate	brain
44	chr1:85108400-85121400	Weak transcription	Left Ventricle	heart
45	chr1:85108400-85121600	Weak transcription	Brain Germinal Matrix	brain
46	chr1:85108600-85113400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr1:85108600-85114800	Weak transcription	Brain Substantia Nigra	brain
48	chr1:85108600-85116000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr1:85108800-85113000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:85108800-85114800	Weak transcription	Colon Smooth Muscle	Colon

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