Variant report

Variant	rs2994449
Chromosome Location	chr1:85166561-85166562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85155313..85157722-chr1:85164509..85167486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11578078	0.92[ASN][1000 genomes]
rs12022113	0.90[ASN][1000 genomes]
rs12120614	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340527	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1340528	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2298076	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2911567	0.90[ASN][1000 genomes]
rs2911571	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2911575	0.98[ASN][1000 genomes]
rs2911578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2911583	0.95[ASN][1000 genomes]
rs2911611	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2943672	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2994429	0.93[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2994437	0.90[ASN][1000 genomes]
rs2994439	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2994440	0.90[ASN][1000 genomes]
rs2994941	0.88[ASN][1000 genomes]
rs2994949	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3096445	0.93[ASN][1000 genomes]
rs3768238	0.97[ASN][1000 genomes]
rs3782	0.88[ASN][1000 genomes]
rs4390189	0.98[ASN][1000 genomes]
rs4551615	0.98[ASN][1000 genomes]
rs56681543	0.96[ASN][1000 genomes]
rs6576722	0.97[ASN][1000 genomes]
rs6576723	0.96[ASN][1000 genomes]
rs6670415	0.97[ASN][1000 genomes]
rs6670434	0.92[ASN][1000 genomes]
rs6682889	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6687220	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs818525	0.85[ASN][1000 genomes]
rs9661716	0.91[ASN][1000 genomes]
rs9662145	0.89[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85157400-85167200	Weak transcription	Psoas Muscle	Psoas
2	chr1:85163000-85168400	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:85163600-85168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:85164200-85167800	Enhancers	Primary T cells from cord blood	blood
5	chr1:85164400-85167800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:85164800-85166800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:85164800-85167000	Weak transcription	HSMM	muscle
8	chr1:85164800-85167000	Weak transcription	HSMMtube	muscle
9	chr1:85164800-85167200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:85164800-85167200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:85164800-85167200	Weak transcription	Aorta	Aorta
12	chr1:85164800-85167400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:85164800-85167400	Enhancers	NHLF	lung
14	chr1:85164800-85168000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:85164800-85169600	Weak transcription	Fetal Lung	lung
16	chr1:85164800-85170200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:85164800-85170800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:85164800-85170800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:85164800-85171000	Weak transcription	Fetal Kidney	kidney
20	chr1:85165000-85167200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr1:85165000-85169600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:85165200-85166800	Enhancers	Primary B cells from cord blood	blood
23	chr1:85165200-85167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:85165200-85167200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:85165200-85167200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:85165200-85167200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:85165200-85167200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:85165200-85167200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:85165200-85167200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:85165200-85170200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:85165400-85167200	Weak transcription	Osteobl	bone
33	chr1:85165800-85167400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr1:85166000-85167200	Weak transcription	Fetal Brain Female	brain
35	chr1:85166000-85168400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:85166000-85168400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:85166200-85166600	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr1:85166200-85166800	Weak transcription	Small Intestine	intestine
39	chr1:85166200-85167200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:85166200-85167200	Weak transcription	Fetal Stomach	stomach
41	chr1:85166200-85167400	Weak transcription	Fetal Brain Male	brain
42	chr1:85166200-85168400	Weak transcription	Fetal Muscle Leg	muscle
43	chr1:85166200-85169600	Weak transcription	Fetal Intestine Large	intestine
44	chr1:85166200-85170200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr1:85166200-85170600	Weak transcription	K562	blood
46	chr1:85166200-85173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:85166400-85167200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr1:85166400-85168200	Weak transcription	Colon Smooth Muscle	Colon
49	chr1:85166400-85169600	Weak transcription	Fetal Intestine Small	intestine
50	chr1:85166400-85170200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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