The 2.0 version of rSNPBase

Variant report

Variant rs2911578
Chromosome Location chr1:85165017-85165018
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85157400-85167200 Weak transcription Psoas Muscle Psoas
2 chr1:85162800-85165200 Enhancers Fetal Stomach stomach
3 chr1:85162800-85165200 Enhancers Stomach Smooth Muscle stomach
4 chr1:85162800-85166200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:85162800-85166200 Enhancers Fetal Brain Male brain
6 chr1:85162800-85166200 Enhancers Fetal Intestine Large intestine
7 chr1:85162800-85166400 Enhancers Fetal Intestine Small intestine
8 chr1:85163000-85165200 Enhancers iPS-18 Cell Line embryonic stem cell
9 chr1:85163000-85165200 Enhancers HMEC breast
10 chr1:85163000-85166200 Enhancers K562 blood
11 chr1:85163000-85166400 Enhancers Colon Smooth Muscle Colon
12 chr1:85163000-85168400 Enhancers Rectal Smooth Muscle rectum
13 chr1:85163200-85165200 Enhancers HUES48 Cell Line embryonic stem cell
14 chr1:85163200-85165200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:85163200-85165200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:85163200-85165200 Enhancers Hela-S3 cervix
17 chr1:85163200-85165200 Enhancers NHEK skin
18 chr1:85163200-85165400 Enhancers ES-I3 Cell Line embryonic stem cell
19 chr1:85163200-85166200 Enhancers Duodenum Mucosa Duodenum
20 chr1:85163400-85165200 Enhancers H9 Cell Line embryonic stem cell
21 chr1:85163400-85165200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:85163400-85165200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:85163400-85165200 Enhancers Pancreatic Islets Pancreatic Islet
24 chr1:85163400-85166200 Enhancers Fetal Muscle Leg muscle
25 chr1:85163600-85168400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr1:85163800-85165200 Enhancers Skeletal Muscle Female skeletal muscle
27 chr1:85163800-85166400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr1:85164000-85165600 Weak transcription Stomach Mucosa stomach
29 chr1:85164000-85166000 Enhancers Fetal Brain Female brain
30 chr1:85164200-85167800 Enhancers Primary T cells from cord blood blood
31 chr1:85164400-85165200 Weak transcription Primary B cells from cord blood blood
32 chr1:85164400-85165400 Enhancers Osteobl bone
33 chr1:85164400-85165800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:85164400-85166400 Enhancers NHDF-Ad bronchial
35 chr1:85164400-85167800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:85164800-85165800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:85164800-85166000 Weak transcription Small Intestine intestine
38 chr1:85164800-85166200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:85164800-85166400 Enhancers Primary hematopoietic stem cells short term culture blood
40 chr1:85164800-85166800 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:85164800-85167000 Weak transcription HSMM muscle
42 chr1:85164800-85167000 Weak transcription HSMMtube muscle
43 chr1:85164800-85167200 Weak transcription iPS-15b Cell Line embryonic stem cell
44 chr1:85164800-85167200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:85164800-85167200 Weak transcription Aorta Aorta
46 chr1:85164800-85167400 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:85164800-85167400 Enhancers NHLF lung
48 chr1:85164800-85168000 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr1:85164800-85169600 Weak transcription Fetal Lung lung
50 chr1:85164800-85170200 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015