Variant report

Variant	rs6682889
Chromosome Location	chr1:85142177-85142178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85140411..85147202-chr1:85153312..85157678,10	K562	blood:
2	chr1:85142130..85144254-chr1:85145541..85147633,2	K562	blood:
3	chr1:85141473..85143036-chr1:85155265..85157431,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11578078	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12022113	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12120614	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12123923	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs12125951	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12127432	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1340527	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1340528	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2298076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2911567	0.92[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2911571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2911575	0.99[ASN][1000 genomes]
rs2911578	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2911583	0.96[ASN][1000 genomes]
rs2911611	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2943672	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2994429	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2994437	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2994439	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2994440	0.94[ASN][1000 genomes]
rs2994449	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2994941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2994949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3096445	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs3768238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs3782	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4390189	0.99[ASN][1000 genomes]
rs4551615	0.99[ASN][1000 genomes]
rs56681543	0.99[ASN][1000 genomes]
rs6576722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6576723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6670415	1.00[ASN][1000 genomes]
rs6670434	0.95[ASN][1000 genomes]
rs6687220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524511	0.84[JPT][hapmap]
rs818525	0.82[ASN][1000 genomes]
rs9661716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9662145	0.86[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:85111800-85152000	Weak transcription	Aorta	Aorta
5	chr1:85124400-85144400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:85124400-85145200	Weak transcription	Fetal Brain Male	brain
7	chr1:85124400-85149200	Weak transcription	Brain Angular Gyrus	brain
8	chr1:85124600-85154400	Weak transcription	A549	lung
9	chr1:85124800-85153800	Weak transcription	Hela-S3	cervix
10	chr1:85125000-85153400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:85125000-85153600	Weak transcription	Fetal Kidney	kidney
12	chr1:85126200-85154000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:85126400-85143000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr1:85126400-85154200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:85126400-85154800	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:85126400-85155200	Weak transcription	Left Ventricle	heart
17	chr1:85126600-85152200	Weak transcription	Thymus	Thymus
18	chr1:85126600-85153400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:85126600-85154400	Weak transcription	Fetal Stomach	stomach
20	chr1:85127800-85154400	Weak transcription	Brain Germinal Matrix	brain
21	chr1:85128200-85153600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:85128600-85153200	Weak transcription	Dnd41	blood
23	chr1:85128800-85151000	Weak transcription	Fetal Brain Female	brain
24	chr1:85130000-85143000	Weak transcription	Primary B cells from cord blood	blood
25	chr1:85130400-85153600	Weak transcription	NHDF-Ad	bronchial
26	chr1:85131800-85143200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:85132000-85145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:85133600-85143200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr1:85134400-85153400	Weak transcription	NHLF	lung
30	chr1:85136200-85143400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:85138000-85154800	Weak transcription	HSMMtube	muscle
32	chr1:85138400-85143000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:85138400-85153400	Weak transcription	Fetal Thymus	thymus
34	chr1:85138600-85153400	Weak transcription	HSMM	muscle
35	chr1:85138800-85155000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:85139000-85142400	Enhancers	Fetal Intestine Small	intestine
37	chr1:85139200-85142200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr1:85139800-85143000	Weak transcription	K562	blood
39	chr1:85139800-85152800	Weak transcription	Primary T cells from cord blood	blood
40	chr1:85139800-85153000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:85140000-85154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:85140800-85153400	Weak transcription	NHEK	skin
43	chr1:85141000-85153600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:85141000-85154200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:85141000-85154200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:85141400-85142200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr1:85141400-85143000	Weak transcription	Fetal Intestine Large	intestine
48	chr1:85141400-85145200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr1:85141400-85152800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:85141400-85154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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