Variant report

Variant	rs9661716
Chromosome Location	chr1:85206329-85206330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85197216..85199232-chr1:85204194..85206731,2	K562	blood:
2	chr1:85153604..85156200-chr1:85205472..85208560,3	K562	blood:
3	chr1:85145890..85148495-chr1:85203817..85206380,2	K562	blood:
4	chr1:85203342..85206784-chr1:85207090..85211392,4	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11578078	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12022113	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12120614	0.90[ASN][1000 genomes]
rs12123923	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs12125951	0.92[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap]
rs12127432	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs1340527	0.94[ASN][1000 genomes]
rs1340528	0.94[ASN][1000 genomes]
rs2298076	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2911567	0.92[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2911571	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2911575	0.94[ASN][1000 genomes]
rs2911578	0.94[ASN][1000 genomes]
rs2911583	0.90[ASN][1000 genomes]
rs2911611	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs2943672	0.92[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap]
rs2994429	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2994437	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2994439	0.86[ASN][1000 genomes]
rs2994440	0.86[ASN][1000 genomes]
rs2994449	0.91[ASN][1000 genomes]
rs2994941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2994949	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs3096445	1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[ASN][1000 genomes]
rs3768238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3782	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs4390189	0.94[ASN][1000 genomes]
rs4551615	0.94[ASN][1000 genomes]
rs56681543	0.91[ASN][1000 genomes]
rs6576722	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6576723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6670415	0.93[ASN][1000 genomes]
rs6670434	0.88[ASN][1000 genomes]
rs6682889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6687220	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7524511	0.84[JPT][hapmap]
rs818525	0.85[ASN][1000 genomes]
rs9662145	0.85[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85204200-85212800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:85204200-85230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:85204800-85206400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:85204800-85206600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:85204800-85206800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:85205400-85206400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:85205400-85206600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:85205400-85208000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:85205800-85206400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr1:85205800-85206600	Enhancers	Fetal Brain Female	brain
11	chr1:85205800-85208000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:85206000-85207600	Weak transcription	Fetal Brain Male	brain
13	chr1:85206200-85206800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:85206200-85214000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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