Variant report

Variant	rs2994437
Chromosome Location	chr1:85128280-85128281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85126929..85129572-chr1:85146357..85149083,2	K562	blood:
2	chr1:85127387..85129644-chr1:85153276..85157507,4	K562	blood:
3	chr1:85120590..85123062-chr1:85128011..85129578,2	K562	blood:
4	chr1:85127387..85129644-chr1:85153276..85157507,3	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11578078	0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs12022113	0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12120614	0.91[ASN][1000 genomes]
rs12123923	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12125951	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12127432	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1340527	0.92[ASN][1000 genomes]
rs1340528	0.92[ASN][1000 genomes]
rs2298076	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs2911567	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2911571	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2911575	0.92[ASN][1000 genomes]
rs2911578	0.92[ASN][1000 genomes]
rs2911583	0.89[ASN][1000 genomes]
rs2911611	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2943672	0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[ASN][1000 genomes]
rs2994429	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2994439	1.00[ASN][1000 genomes]
rs2994440	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994449	0.90[ASN][1000 genomes]
rs2994941	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2994949	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs3096445	0.86[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4390189	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4551615	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56681543	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6576722	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.91[ASN][1000 genomes]
rs6576723	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs6670415	0.94[ASN][1000 genomes]
rs6670434	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6682889	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6687220	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs9661716	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs9662145	0.80[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:85099400-85131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:85106200-85140400	Weak transcription	NHEK	skin
5	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:85108200-85128800	Weak transcription	GM12878-XiMat	blood
8	chr1:85109200-85133000	Weak transcription	Pancreas	Pancrea
9	chr1:85110800-85129400	Strong transcription	Fetal Thymus	thymus
10	chr1:85111400-85128400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:85111400-85131400	Weak transcription	HSMM	muscle
12	chr1:85111800-85152000	Weak transcription	Aorta	Aorta
13	chr1:85112400-85129000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:85112400-85138200	Strong transcription	K562	blood
15	chr1:85112600-85130600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:85113000-85131200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:85113200-85138200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:85113400-85129200	Weak transcription	Fetal Heart	heart
19	chr1:85113400-85138200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:85114400-85130800	Weak transcription	Ovary	ovary
21	chr1:85114400-85139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:85114600-85130800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:85114800-85128600	Strong transcription	Dnd41	blood
24	chr1:85114800-85133000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:85114800-85134000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:85115400-85137800	Weak transcription	Small Intestine	intestine
27	chr1:85115800-85133800	Weak transcription	Lung	lung
28	chr1:85116200-85128600	Weak transcription	Fetal Lung	lung
29	chr1:85116200-85135400	Weak transcription	HMEC	breast
30	chr1:85116400-85134800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr1:85117800-85137800	Weak transcription	Psoas Muscle	Psoas
32	chr1:85119200-85134600	Weak transcription	Right Ventricle	heart
33	chr1:85119400-85131400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:85119400-85136600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:85120200-85128800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:85120400-85128400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:85120400-85128800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:85120600-85129000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:85120600-85129600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:85120600-85134800	Strong transcription	Fetal Intestine Large	intestine
41	chr1:85121200-85129600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:85122600-85129600	Weak transcription	HepG2	liver
43	chr1:85122800-85136000	Weak transcription	Placenta	Placenta
44	chr1:85123000-85128400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:85123200-85130000	Strong transcription	Primary B cells from cord blood	blood
46	chr1:85123600-85139200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:85123800-85137400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:85123800-85140600	Weak transcription	Brain Substantia Nigra	brain
49	chr1:85124200-85129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr1:85124200-85131400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links