Variant report

Variant	rs1475494
Chromosome Location	chr9:140509781-140509782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:45)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:45 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr9:140509406-140510148	MCF-7	breast:	n/a	n/a
2	POLR2A	chr9:140508471-140510502	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr9:140505373-140510623	K562	blood:	n/a	n/a
4	POLR2A	chr9:140509097-140510066	ProgFib	skin:	n/a	n/a
5	POLR2A	chr9:140509620-140509954	K562	blood:	n/a	n/a
6	POLR2A	chr9:140509006-140510465	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr9:140509475-140509966	MCF-7	breast:	n/a	n/a
8	POLR2A	chr9:140507291-140510559	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr9:140507953-140510552	PANC-1	pancreas:	n/a	n/a
10	POLR2A	chr9:140509627-140510626	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr9:140505849-140510618	A549	lung:	n/a	n/a
12	POLR2A	chr9:140506019-140510463	Hela-S3	cervix:	n/a	n/a
13	MAX	chr9:140509165-140510115	MCF-7	breast:	n/a	n/a
14	POLR2A	chr9:140505860-140510540	A549	lung:	n/a	n/a
15	POLR2A	chr9:140509159-140510679	HepG2	liver:	n/a	n/a
16	POLR2A	chr9:140508166-140510488	K562	blood:	n/a	n/a
17	POLR2A	chr9:140505967-140511604	K562	blood:	n/a	n/a
18	POLR2A	chr9:140505993-140513476	SK-N-MC	brain:	n/a	n/a
19	POLR2A	chr9:140505314-140511636	K562	blood:	n/a	n/a
20	USF2	chr9:140509184-140510458	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr9:140505859-140514533	MCF-7	breast:	n/a	n/a
22	POLR2A	chr9:140505499-140510679	ECC-1	luminal epithelium:	n/a	n/a
23	POLR2A	chr9:140506142-140509798	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr9:140509237-140509783	HUVEC	blood vessel:	n/a	n/a
25	POLR2A	chr9:140507789-140510295	HEK293	kidney:	n/a	n/a
26	POLR2A	chr9:140505964-140510573	Hela-S3	cervix:	n/a	n/a
27	NR2F2	chr9:140509370-140510253	MCF-7	breast:	n/a	n/a
28	NR2F2	chr9:140509451-140510117	MCF-7	breast:	n/a	n/a
29	POLR2A	chr9:140508290-140510353	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr9:140507392-140510581	K562	blood:	n/a	n/a
31	POLR2A	chr9:140505350-140511605	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr9:140505708-140513525	HepG2	liver:	n/a	n/a
33	POLR2A	chr9:140508820-140509923	HL-60	blood:	n/a	n/a
34	POLR2A	chr9:140508965-140510453	HCT-116	colon:	n/a	n/a
35	FOXA1	chr9:140509630-140509891	T-47D	breast:	n/a	n/a
36	POLR2A	chr9:140509766-140509862	HepG2	liver:	n/a	n/a
37	POLR2A	chr9:140505948-140510656	HL-60	blood:	n/a	n/a
38	POLR2A	chr9:140509119-140510506	Hela-S3	cervix:	n/a	n/a
39	CHD2	chr9:140508902-140510389	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr9:140509166-140510245	MCF-7	breast:	n/a	n/a
41	POLR2A	chr9:140507822-140510517	K562	blood:	n/a	n/a
42	POLR2A	chr9:140508246-140510660	HCT-116	colon:	n/a	n/a
43	POLR2A	chr9:140508752-140509954	PFSK-1	brain:	n/a	n/a
44	POLR2A	chr9:140506103-140510351	Raji	blood:	n/a	n/a
45	POLR2A	chr9:140506395-140510627	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:140470864..140473169-chr9:140508209..140510262,2	K562	blood:
2	chr9:140482399..140489274-chr9:140503366..140510626,23	MCF-7	breast:
3	chr9:140482066..140484246-chr9:140508462..140511181,2	K562	blood:
4	chr9:140481390..140486340-chr9:140509681..140515296,7	K562	blood:
5	chr9:140444995..140447677-chr9:140508337..140511208,2	MCF-7	breast:
6	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:

No data

Variant related genes	Relation type
EHMT1	TF binding region
ENSG00000148399	Chromatin interaction
ENSG00000165724	Chromatin interaction
ENSG00000182154	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1041289	1.00[AMR][1000 genomes]
rs11137188	1.00[ASN][1000 genomes]
rs12003071	1.00[ASN][1000 genomes]
rs12339028	1.00[ASN][1000 genomes]
rs1328921	1.00[AMR][1000 genomes]
rs1571440	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1753859	1.00[AMR][1000 genomes]
rs1891625	1.00[AMR][1000 genomes]
rs2149562	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2252695	0.87[AFR][1000 genomes]
rs2353768	0.89[ASW][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs2480115	1.00[AMR][1000 genomes]
rs2488596	1.00[AMR][1000 genomes]
rs2501569	0.85[AFR][1000 genomes]
rs2797941	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3118929	1.00[AMR][1000 genomes]
rs3123507	1.00[ASN][1000 genomes]
rs3125780	1.00[ASN][1000 genomes]
rs3125781	1.00[ASN][1000 genomes]
rs41302689	1.00[ASN][1000 genomes]
rs4333685	1.00[ASN][1000 genomes]
rs7020554	1.00[ASN][1000 genomes]
rs7042621	1.00[ASN][1000 genomes]
rs821311	0.80[ASW][hapmap];0.81[LWK][hapmap]
rs821314	0.94[MKK][hapmap];1.00[AMR][1000 genomes]
rs821315	1.00[AMR][1000 genomes]
rs821321	1.00[AMR][1000 genomes]
rs821322	1.00[AMR][1000 genomes]
rs866594	1.00[AMR][1000 genomes]
rs9314636	1.00[ASN][1000 genomes]
rs9314637	1.00[ASN][1000 genomes]
rs9314638	1.00[ASN][1000 genomes]
rs9410035	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9410110	1.00[AMR][1000 genomes]
rs9410120	1.00[ASN][1000 genomes]
rs9410122	1.00[ASN][1000 genomes]
rs9410123	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
4	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
5	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
8	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
9	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
10	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
11	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
12	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
13	nsv831762	chr9:140338779-140514107	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	n/a
14	nsv1039672	chr9:140343466-140707505	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
15	nsv540358	chr9:140343466-140707505	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
16	nsv1041512	chr9:140350404-140612859	Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
17	nsv540359	chr9:140350404-140612859	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
18	nsv616022	chr9:140372570-140523429	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	n/a
19	nsv616023	chr9:140372570-140602887	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
20	nsv531603	chr9:140378700-140590977	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
21	nsv531665	chr9:140378700-141073897	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	n/a
22	nsv868924	chr9:140407572-141053525	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	n/a
23	nsv1039933	chr9:140408112-141005637	Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
24	nsv531666	chr9:140409395-141015925	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
25	nsv616024	chr9:140414410-140536098	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
26	nsv831763	chr9:140439831-140614021	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
27	nsv540364	chr9:140447860-140514807	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	n/a
28	esv3398333	chr9:140451462-140814795	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	n/a
29	nsv1052036	chr9:140452641-141018985	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
30	nsv540365	chr9:140452641-141018985	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
31	nsv949702	chr9:140466816-141027939	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	n/a
32	nsv531667	chr9:140468821-140936261	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
33	nsv894665	chr9:140469600-140523429	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	n/a
34	nsv894666	chr9:140470564-140518576	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	n/a
35	nsv894667	chr9:140473729-140518576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	n/a
36	nsv894668	chr9:140477812-140518576	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	n/a
37	nsv531668	chr9:140492807-140986221	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	n/a
38	nsv894669	chr9:140498789-140518576	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	n/a
39	nsv894670	chr9:140503095-140526439	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	n/a
40	nsv894671	chr9:140505476-140519654	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	35 gene(s)	inside rSNPs	n/a
41	nsv894672	chr9:140506209-140518576	Genic enhancers Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	35 gene(s)	inside rSNPs	n/a
42	nsv894673	chr9:140507688-140518576	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	n/a
43	nsv894674	chr9:140508222-140518576	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
44	nsv894675	chr9:140508222-140519654	Flanking Active TSS Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1475494	ENSG00000197070	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140501800-140510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:140501800-140512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:140502400-140512000	Weak transcription	Fetal Brain Male	brain
4	chr9:140505400-140509800	Genic enhancers	Gastric	stomach
5	chr9:140506600-140512200	Weak transcription	Small Intestine	intestine
6	chr9:140507000-140511200	Strong transcription	Brain Cingulate Gyrus	brain
7	chr9:140507000-140511400	Weak transcription	Fetal Heart	heart
8	chr9:140507200-140510400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:140507200-140510800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:140507200-140511000	Weak transcription	HepG2	liver
11	chr9:140507200-140511200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:140507200-140511400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:140507200-140511600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:140507200-140511600	Strong transcription	Fetal Brain Female	brain
15	chr9:140507200-140511800	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:140507200-140512200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:140507200-140512400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:140507400-140510600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr9:140507400-140510800	Weak transcription	K562	blood
20	chr9:140507400-140511200	Weak transcription	HUVEC	blood vessel
21	chr9:140507400-140511600	Weak transcription	Fetal Lung	lung
22	chr9:140507400-140511800	Strong transcription	Fetal Stomach	stomach
23	chr9:140507400-140511800	Weak transcription	Right Atrium	heart
24	chr9:140507400-140512000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:140507400-140512000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:140507400-140512000	Weak transcription	HSMMtube	muscle
27	chr9:140507600-140510400	Strong transcription	Primary T cells from cord blood	blood
28	chr9:140507600-140510600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:140507600-140510600	Strong transcription	Brain Germinal Matrix	brain
30	chr9:140507600-140510800	Weak transcription	NH-A	brain
31	chr9:140507600-140511000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr9:140507600-140511200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:140507600-140511200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:140507600-140511200	Strong transcription	Fetal Muscle Leg	muscle
35	chr9:140507600-140511400	Strong transcription	NHLF	lung
36	chr9:140507600-140511600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:140507800-140509800	Genic enhancers	Right Ventricle	heart
38	chr9:140507800-140510000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:140507800-140510200	Strong transcription	Dnd41	blood
40	chr9:140507800-140510400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:140507800-140510400	Strong transcription	Aorta	Aorta
42	chr9:140507800-140510600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:140507800-140510600	Strong transcription	Brain Hippocampus Middle	brain
44	chr9:140507800-140510800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:140507800-140510800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:140507800-140511000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:140507800-140511000	Weak transcription	HSMM	muscle
48	chr9:140507800-140511200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:140507800-140511200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:140507800-140511200	Strong transcription	Stomach Smooth Muscle	stomach

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