Variant report

Variant	rs1477055
Chromosome Location	chr2:37534911-37534912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37533634..37536747-chr2:37545712..37547706,3	K562	blood:
2	chr2:37528873..37532497-chr2:37534243..37536217,3	K562	blood:
3	chr2:37533235..37535380-chr2:37546761..37548910,2	MCF-7	breast:
4	chr2:37512105..37515797-chr2:37531603..37534989,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10177176	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10190959	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs10198835	0.80[CEU][hapmap]
rs1056021	0.82[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs11124569	0.81[JPT][hapmap]
rs11124574	0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap]
rs11124576	0.81[CEU][hapmap]
rs11124578	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap]
rs1158218	0.87[CHB][hapmap];0.93[CHD][hapmap]
rs1158219	0.91[CHB][hapmap];0.98[CHD][hapmap]
rs11689186	0.81[CEU][hapmap]
rs12618410	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs17409947	0.87[CEU][hapmap]
rs17481834	0.87[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap]
rs1989172	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2041836	0.90[JPT][hapmap]
rs2110963	0.81[CEU][hapmap]
rs2160394	0.80[CEU][hapmap]
rs2268987	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2300881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs2300884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2300885	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs2300892	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs2302650	0.81[CEU][hapmap]
rs2888434	0.86[JPT][hapmap]
rs3770759	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs3819892	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs4670195	0.81[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap]
rs4670688	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs4670689	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs4998429	0.90[JPT][hapmap]
rs6544066	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap]
rs6726709	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs9309004	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs9318	0.84[CEU][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1477055	EIF2AK2	cis	parietal	SCAN
rs1477055	CEBPZ	cis	lymphoblastoid	seeQTL
rs1477055	ATL2	cis	cerebellum	SCAN
rs1477055	QPCT	cis	parietal	SCAN
rs1477055	QPCT	cis	lymphoblastoid	seeQTL

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
3	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
6	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
9	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:37513600-37543200	Weak transcription	NHLF	lung
11	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
14	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:37518800-37539000	Weak transcription	Fetal Lung	lung
18	chr2:37518800-37545400	Weak transcription	NH-A	brain
19	chr2:37519000-37549400	Weak transcription	HSMM	muscle
20	chr2:37519200-37543800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:37519200-37545600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:37520200-37543400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:37520200-37545400	Weak transcription	Ovary	ovary
24	chr2:37520200-37549600	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:37520400-37539200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:37520400-37549600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:37520400-37550400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:37523400-37537800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:37529200-37537800	Weak transcription	Aorta	Aorta
30	chr2:37529200-37540200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:37529200-37540400	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:37529400-37545600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:37529600-37545600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr2:37529600-37545600	Weak transcription	NHDF-Ad	bronchial
35	chr2:37530400-37542600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:37530400-37548400	Weak transcription	K562	blood
37	chr2:37530600-37539400	Weak transcription	Primary B cells from cord blood	blood
38	chr2:37530600-37542400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr2:37530600-37542800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:37530600-37548200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:37530600-37550400	Weak transcription	Thymus	Thymus
42	chr2:37530800-37539000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:37530800-37542400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:37530800-37542400	Weak transcription	Dnd41	blood
45	chr2:37530800-37542600	Weak transcription	Gastric	stomach
46	chr2:37530800-37542800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:37530800-37542800	Weak transcription	Fetal Stomach	stomach
48	chr2:37530800-37548600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:37530800-37549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:37531000-37543200	Weak transcription	Fetal Thymus	thymus

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