Variant report

Variant	rs16849271
Chromosome Location	chr4:74207351-74207352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:74207168-74207401	A549	lung:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
2	CTCF	chr4:74207040-74207546	K562	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
3	CTCF	chr4:74207240-74207390	BE2_C	brain:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
4	CTCF	chr4:74207077-74207452	A549	lung:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
5	MAFF	chr4:74207142-74207452	HepG2	liver:	n/a	n/a
6	CTCF	chr4:74207220-74207370	WERI-Rb-1	eye:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
7	RAD21	chr4:74207033-74207430	MCF-7	breast:	n/a	chr4:74207273-74207292
8	FOS	chr4:74207152-74207367	MCF10A-Er-Src	breast:	n/a	n/a
9	SMC3	chr4:74207106-74207499	GM12878	blood:	n/a	chr4:74207274-74207288
10	CTCF	chr4:74207111-74207485	H1-hESC	embryonic stem cell:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
11	MBD4	chr4:74207022-74207575	HepG2	liver:	n/a	n/a
12	CTCF	chr4:74207300-74207450	A549	lung:	n/a	n/a
13	CTCF	chr4:74207260-74207410	Hela-S3	cervix:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
14	CTCF	chr4:74207168-74207401	Pancreas_OC	pancreas:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
15	CTCF	chr4:74207240-74207390	HFF-Myc	foreskin:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
16	CTCF	chr4:74207191-74207367	GM12892	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
17	CTCF	chr4:74207240-74207390	HA-sp	spinal cord:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
18	CTCF	chr4:74207240-74207390	A549	lung:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
19	CTCF	chr4:74207181-74207367	GM19240	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
20	CTCF	chr4:74207178-74207400	ProgFib	skin:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
21	SMC3	chr4:74207068-74207952	HepG2	liver:	n/a	chr4:74207274-74207288
22	CTCF	chr4:74207240-74207390	NHEK	skin:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
23	POU2F2	chr4:74207177-74207425	GM12878	blood:	n/a	n/a
24	CTCF	chr4:74207240-74207390	GM12870	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
25	CTCF	chr4:74207220-74207370	MCF-7	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
26	CTCF	chr4:74207220-74207370	GM12865	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
27	CTCF	chr4:74207057-74207477	T-47D	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
28	CTCF	chr4:74207177-74207368	A549	lung:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
29	RAD21	chr4:74207088-74207562	H1-hESC	embryonic stem cell:	n/a	chr4:74207273-74207292
30	GATA3	chr4:74207170-74207397	T-47D	breast:	n/a	n/a
31	CTCF	chr4:74207142-74207402	Hela-S3	cervix:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
32	CTCF	chr4:74207054-74207422	H1-hESC	embryonic stem cell:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
33	CTCF	chr4:74207260-74207410	HCT-116	colon:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
34	CTCF	chr4:74207220-74207370	AG10803	skin:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
35	FOXA1	chr4:74207074-74207446	HepG2	liver:	n/a	n/a
36	RAD21	chr4:74207013-74207438	MCF-7	breast:	n/a	chr4:74207273-74207292
37	MYBL2	chr4:74206950-74207595	HepG2	liver:	n/a	n/a
38	MYC	chr4:74207194-74207462	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr4:74207170-74207442	A549	lung:	n/a	chr4:74207266-74207277
40	RAD21	chr4:74207052-74207526	ECC-1	luminal epithelium:	n/a	chr4:74207273-74207292
41	CTCF	chr4:74207156-74207411	MCF-7	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
42	CTCF	chr4:74207138-74207431	HepG2	liver:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
43	CTCF	chr4:74207150-74207393	LNCaP	prostate:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
44	CTCF	chr4:74207170-74207370	GM10248	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
45	FOS	chr4:74207261-74207407	MCF10A-Er-Src	breast:	n/a	n/a
46	CTCF	chr4:74207220-74207370	Hela-S3	cervix:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
47	CTCF	chr4:74207089-74207490	K562	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
48	CEBPB	chr4:74207125-74207424	H1-hESC	embryonic stem cell:	n/a	chr4:74207266-74207277 chr4:74207139-74207151
49	NFIC	chr4:74207030-74207610	HepG2	liver:	n/a	n/a
50	CTCF	chr4:74207220-74207370	AG09309	skin:	n/a	chr4:74207273-74207289 chr4:74207274-74207295

No.	Distal block	Cell Line	Cell type
1	chr4:74207075..74207791-chr4:74518783..74520033,4	K562	blood:
2	chr4:74206401..74207863-chr4:74311210..74313292,12	MCF-7	breast:
3	chr4:74206810..74207765-chr4:74439071..74439792,3	K562	blood:
4	chr4:74206950..74207733-chr4:74299795..74300306,2	K562	blood:
5	chr4:74206756..74207673-chr4:74311795..74312505,4	K562	blood:
6	chr4:74207042..74207824-chr4:74311798..74312657,3	MCF-7	breast:
7	chr4:74206358..74209177-chr4:74518525..74521196,2	K562	blood:
8	chr21:41753311..41755433-chr4:74205475..74208182,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALB-5	chr4:74207175-74207428	NONHSAT096841

Variant related genes	Relation type
ENSG00000249976	TF binding region
ENSG00000235123	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849293	1.00[EUR][1000 genomes]
rs16849296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849331	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849365	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849372	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4274815	1.00[EUR][1000 genomes]
rs4336191	1.00[EUR][1000 genomes]
rs4345145	1.00[EUR][1000 genomes]
rs4408930	1.00[EUR][1000 genomes]
rs4429705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478153	1.00[EUR][1000 genomes]
rs4510441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4602471	0.92[EUR][1000 genomes]
rs4694161	0.96[EUR][1000 genomes]
rs4694162	1.00[EUR][1000 genomes]
rs4694614	0.85[EUR][1000 genomes]
rs55637321	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55846325	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56058702	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56247439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446920	1.00[EUR][1000 genomes]
rs6446921	0.81[EUR][1000 genomes]
rs6446922	1.00[EUR][1000 genomes]
rs6446924	1.00[EUR][1000 genomes]
rs6446925	1.00[EUR][1000 genomes]
rs6819109	1.00[EUR][1000 genomes]
rs6821554	1.00[EUR][1000 genomes]
rs6828979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6844516	1.00[EUR][1000 genomes]
rs6853221	1.00[EUR][1000 genomes]
rs7670776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7675336	1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74204200-74207800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:74205000-74207400	Enhancers	Liver	Liver
3	chr4:74205800-74208800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:74206400-74208000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:74206400-74208000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:74207000-74207800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:74207000-74208600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:74207200-74207400	Enhancers	Pancreas	Pancrea
9	chr4:74207200-74207800	Enhancers	Fetal Intestine Large	intestine
10	chr4:74207200-74207800	Enhancers	Fetal Intestine Small	intestine
11	chr4:74207200-74208000	Flanking Active TSS	HepG2	liver

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