Variant report
Variant | rs56285841 |
---|---|
Chromosome Location | chr4:74276524-74276525 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | MBD4 | chr4:74276485-74278341 | HepG2 | liver: | n/a | n/a |
2 | NFIC | chr4:74271609-74277969 | HepG2 | liver: | n/a | n/a |
3 | MBD4 | chr4:74269575-74278337 | HepG2 | liver: | n/a | n/a |
4 | MYBL2 | chr4:74276419-74278363 | HepG2 | liver: | n/a | n/a |
5 | POLR2A | chr4:74269783-74288816 | HepG2 | liver: | n/a | n/a |
6 | POLR2A | chr4:74276474-74281098 | HepG2 | liver: | n/a | n/a |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:74276426..74278467-chr4:74310127..74311716,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ALB | TF binding region |
rs_ID | r2[population] |
---|---|
rs16849265 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849271 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849274 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849279 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849282 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849284 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849287 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849292 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849293 | 0.92[EUR][1000 genomes] |
rs16849296 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849298 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849331 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16849365 | 0.92[EUR][1000 genomes] |
rs16849372 | 0.92[EUR][1000 genomes] |
rs4274815 | 0.92[EUR][1000 genomes] |
rs4336191 | 0.92[EUR][1000 genomes] |
rs4345145 | 0.92[EUR][1000 genomes] |
rs4408930 | 0.92[EUR][1000 genomes] |
rs4429705 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4478153 | 0.92[EUR][1000 genomes] |
rs4510441 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4602471 | 0.84[EUR][1000 genomes] |
rs4694161 | 0.89[EUR][1000 genomes] |
rs4694162 | 0.92[EUR][1000 genomes] |
rs4694614 | 0.92[EUR][1000 genomes] |
rs55637321 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs55846325 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs56058702 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs56247439 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6446920 | 0.92[EUR][1000 genomes] |
rs6446922 | 0.92[EUR][1000 genomes] |
rs6446924 | 0.92[EUR][1000 genomes] |
rs6446925 | 0.92[EUR][1000 genomes] |
rs6819109 | 0.92[EUR][1000 genomes] |
rs6821554 | 0.92[EUR][1000 genomes] |
rs6828979 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6844516 | 0.92[EUR][1000 genomes] |
rs6853221 | 0.92[EUR][1000 genomes] |
rs7670776 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7675336 | 0.92[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3430875 | chr4:74243646-74420354 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv879490 | chr4:74258832-74285223 | Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv879491 | chr4:74275515-74292407 | Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:74271600-74283200 | Transcr. at gene 5' and 3' | HepG2 | liver |
2 | chr4:74272000-74283400 | Transcr. at gene 5' and 3' | Liver | Liver |
3 | chr4:74272000-74298200 | Weak transcription | Pancreas | Pancrea |