Variant report

Variant	rs55637321
Chromosome Location	chr4:74282652-74282653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr4:74278420-74289035	HepG2	liver:	n/a	n/a
2	MBD4	chr4:74278340-74288994	HepG2	liver:	n/a	n/a
3	POLR2A	chr4:74282337-74282661	HepG2	liver:	n/a	n/a
4	NFIC	chr4:74281257-74282881	HepG2	liver:	n/a	n/a
5	POLR2A	chr4:74281302-74282762	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:74281233-74286050	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:74281302-74292684	HepG2	liver:	n/a	n/a
8	HEY1	chr4:74281153-74283631	HepG2	liver:	n/a	n/a
9	ARID3A	chr4:74281539-74282715	HepG2	liver:	n/a	n/a
10	HEY1	chr4:74276540-74288412	HepG2	liver:	n/a	n/a
11	POLR2A	chr4:74281126-74288409	HepG2	liver:	n/a	n/a
12	POLR2A	chr4:74280399-74289395	HepG2	liver:	n/a	n/a
13	POLR2A	chr4:74282110-74282833	HepG2	liver:	n/a	n/a
14	POLR2A	chr4:74269783-74288816	HepG2	liver:	n/a	n/a
15	MBD4	chr4:74281185-74283644	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74281238..74283827-chr4:74315947..74318394,2	K562	blood:

Variant related genes	Relation type
ALB	TF binding region
ENSG00000081051	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849271	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849274	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849279	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849282	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849284	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849287	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849292	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849293	0.85[EUR][1000 genomes]
rs16849296	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849298	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849365	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849372	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4274815	0.85[EUR][1000 genomes]
rs4336191	0.85[EUR][1000 genomes]
rs4345145	0.85[EUR][1000 genomes]
rs4408930	0.85[EUR][1000 genomes]
rs4429705	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4478153	0.85[EUR][1000 genomes]
rs4510441	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4694161	0.81[EUR][1000 genomes]
rs4694162	0.85[EUR][1000 genomes]
rs4694614	1.00[EUR][1000 genomes]
rs55846325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56058702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446920	0.85[EUR][1000 genomes]
rs6446922	0.85[EUR][1000 genomes]
rs6446924	0.85[EUR][1000 genomes]
rs6446925	0.85[EUR][1000 genomes]
rs6819109	0.85[EUR][1000 genomes]
rs6821554	0.85[EUR][1000 genomes]
rs6828979	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6844516	0.85[EUR][1000 genomes]
rs6853221	0.85[EUR][1000 genomes]
rs7657965	0.91[AFR][1000 genomes]
rs7658135	0.91[AFR][1000 genomes]
rs7670776	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7675336	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv879490	chr4:74258832-74285223	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879491	chr4:74275515-74292407	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74271600-74283200	Transcr. at gene 5' and 3'	HepG2	liver
2	chr4:74272000-74283400	Transcr. at gene 5' and 3'	Liver	Liver
3	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
4	chr4:74280400-74286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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