Variant report

Variant	rs16849365
Chromosome Location	chr4:74292499-74292500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:74292329-74292528	IMR90	lung:	n/a	n/a
2	POLR2A	chr4:74281302-74292684	HepG2	liver:	n/a	n/a
3	FOXA2	chr4:74292382-74292703	HepG2	liver:	n/a	n/a
4	HNF4A	chr4:74292449-74292723	HepG2	liver:	n/a	chr4:74292596-74292604 chr4:74292595-74292603
5	FOXA1	chr4:74292340-74292768	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74289653..74292919-chr4:74294255..74297611,3	K562	blood:

Variant related genes	Relation type
AFP	TF binding region
ENSG00000081051	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849271	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849274	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849279	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849282	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849284	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849287	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849292	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849293	0.85[EUR][1000 genomes]
rs16849296	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849298	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849331	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849372	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4274815	0.85[EUR][1000 genomes]
rs4336191	0.85[EUR][1000 genomes]
rs4345145	0.85[EUR][1000 genomes]
rs4408930	0.85[EUR][1000 genomes]
rs4429705	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4478153	0.85[EUR][1000 genomes]
rs4510441	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4694161	0.81[EUR][1000 genomes]
rs4694162	0.85[EUR][1000 genomes]
rs4694614	1.00[EUR][1000 genomes]
rs55637321	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55846325	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56058702	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247439	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	0.92[EUR][1000 genomes]
rs6446920	0.85[EUR][1000 genomes]
rs6446922	0.85[EUR][1000 genomes]
rs6446924	0.85[EUR][1000 genomes]
rs6446925	0.85[EUR][1000 genomes]
rs6819109	0.85[EUR][1000 genomes]
rs6821554	0.85[EUR][1000 genomes]
rs6828979	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6844516	0.85[EUR][1000 genomes]
rs6853221	0.85[EUR][1000 genomes]
rs7657965	0.91[AFR][1000 genomes]
rs7658135	0.91[AFR][1000 genomes]
rs7670776	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7675336	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv980527	chr4:74289660-74297406	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
2	chr4:74287400-74295400	Weak transcription	Liver	Liver
3	chr4:74291200-74297000	Enhancers	HepG2	liver

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