Variant report

Variant	rs16849296
Chromosome Location	chr4:74245911-74245912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849293	1.00[EUR][1000 genomes]
rs16849298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849331	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849365	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849372	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4274815	1.00[EUR][1000 genomes]
rs4336191	1.00[EUR][1000 genomes]
rs4345145	1.00[EUR][1000 genomes]
rs4408930	1.00[EUR][1000 genomes]
rs4429705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478153	1.00[EUR][1000 genomes]
rs4510441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4602471	0.92[EUR][1000 genomes]
rs4694161	0.96[EUR][1000 genomes]
rs4694162	1.00[EUR][1000 genomes]
rs4694614	0.85[EUR][1000 genomes]
rs55637321	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55846325	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56058702	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56247439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446920	1.00[EUR][1000 genomes]
rs6446921	0.81[EUR][1000 genomes]
rs6446922	1.00[EUR][1000 genomes]
rs6446924	1.00[EUR][1000 genomes]
rs6446925	1.00[EUR][1000 genomes]
rs6819109	1.00[EUR][1000 genomes]
rs6821554	1.00[EUR][1000 genomes]
rs6828979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6844516	1.00[EUR][1000 genomes]
rs6853221	1.00[EUR][1000 genomes]
rs7670776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7675336	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74245200-74248600	Enhancers	Liver	Liver
2	chr4:74245200-74251200	Enhancers	HepG2	liver

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