Variant report

Variant	rs16849274
Chromosome Location	chr4:74207442-74207443
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:74207040-74207546	K562	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
2	CTCF	chr4:74207077-74207452	A549	lung:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
3	MAFF	chr4:74207142-74207452	HepG2	liver:	n/a	n/a
4	SMC3	chr4:74207106-74207499	GM12878	blood:	n/a	chr4:74207274-74207288
5	CTCF	chr4:74207111-74207485	H1-hESC	embryonic stem cell:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
6	MBD4	chr4:74207022-74207575	HepG2	liver:	n/a	n/a
7	CTCF	chr4:74207300-74207450	A549	lung:	n/a	n/a
8	SMC3	chr4:74207068-74207952	HepG2	liver:	n/a	chr4:74207274-74207288
9	CTCF	chr4:74207057-74207477	T-47D	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
10	RAD21	chr4:74207088-74207562	H1-hESC	embryonic stem cell:	n/a	chr4:74207273-74207292
11	FOXA1	chr4:74207074-74207446	HepG2	liver:	n/a	n/a
12	MYBL2	chr4:74206950-74207595	HepG2	liver:	n/a	n/a
13	MYC	chr4:74207194-74207462	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr4:74207170-74207442	A549	lung:	n/a	chr4:74207266-74207277
15	RAD21	chr4:74207052-74207526	ECC-1	luminal epithelium:	n/a	chr4:74207273-74207292
16	CTCF	chr4:74207089-74207490	K562	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
17	NFIC	chr4:74207030-74207610	HepG2	liver:	n/a	n/a
18	RAD21	chr4:74207098-74207498	Hela-S3	cervix:	n/a	chr4:74207273-74207292
19	YY1	chr4:74207101-74207555	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr4:74206987-74207633	SK-N-SH	brain:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
21	RAD21	chr4:74207128-74207470	SK-N-SH_RA	brain:	n/a	chr4:74207273-74207292
22	RAD21	chr4:74207114-74207535	SK-N-SH	brain:	n/a	chr4:74207273-74207292
23	RAD21	chr4:74206979-74207594	A549	lung:	n/a	chr4:74207273-74207292
24	CTCF	chr4:74207140-74207454	T-47D	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
25	RAD21	chr4:74207087-74207500	HepG2	liver:	n/a	chr4:74207273-74207292
26	SMC3	chr4:74207133-74207463	K562	blood:	n/a	chr4:74207274-74207288
27	CTCF	chr4:74207041-74207526	MCF-7	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
28	ZNF143	chr4:74207117-74207472	H1-hESC	embryonic stem cell:	n/a	n/a
29	FOXA2	chr4:74207141-74207464	HepG2	liver:	n/a	n/a
30	RAD21	chr4:74207108-74207469	K562	blood:	n/a	chr4:74207273-74207292
31	CTCF	chr4:74207128-74207507	HCT-116	colon:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
32	CEBPB	chr4:74207128-74207458	MCF-7	breast:	n/a	chr4:74207266-74207277 chr4:74207139-74207151
33	CEBPB	chr4:74207116-74207451	HepG2	liver:	n/a	chr4:74207266-74207277 chr4:74207139-74207151
34	RAD21	chr4:74207098-74207495	GM12878	blood:	n/a	chr4:74207273-74207292
35	SMC3	chr4:74207040-74207459	SK-N-SH	brain:	n/a	chr4:74207274-74207288
36	RAD21	chr4:74206937-74207667	HCT-116	colon:	n/a	chr4:74207273-74207292
37	CTCF	chr4:74207300-74207450	AG04450	lung:	n/a	n/a
38	ZNF143	chr4:74207113-74207453	GM12878	blood:	n/a	n/a
39	RAD21	chr4:74207025-74207489	A549	lung:	n/a	chr4:74207273-74207292
40	ARID3A	chr4:74207111-74207495	HepG2	liver:	n/a	n/a
41	E2F4	chr4:74207271-74207485	MCF10A-Er-Src	breast:	n/a	n/a
42	SMC3	chr4:74207096-74207478	Hela-S3	cervix:	n/a	chr4:74207274-74207288
43	ZNF143	chr4:74207147-74207443	K562	blood:	n/a	n/a
44	CTCF	chr4:74207068-74207478	GM12878	blood:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
45	NFIC	chr4:74207120-74207506	HepG2	liver:	n/a	n/a
46	CTCF	chr4:74207086-74207442	A549	lung:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
47	MBD4	chr4:74207166-74207496	HepG2	liver:	n/a	n/a
48	RAD21	chr4:74207099-74207555	ECC-1	luminal epithelium:	n/a	chr4:74207273-74207292
49	CTCF	chr4:74207030-74207544	MCF-7	breast:	n/a	chr4:74207273-74207289 chr4:74207274-74207295
50	RAD21	chr4:74207005-74207608	HCT-116	colon:	n/a	chr4:74207273-74207292

No.	Distal block	Cell Line	Cell type
1	chr4:74207075..74207791-chr4:74518783..74520033,4	K562	blood:
2	chr4:74206401..74207863-chr4:74311210..74313292,12	MCF-7	breast:
3	chr4:74206810..74207765-chr4:74439071..74439792,3	K562	blood:
4	chr4:74206950..74207733-chr4:74299795..74300306,2	K562	blood:
5	chr4:74206756..74207673-chr4:74311795..74312505,4	K562	blood:
6	chr4:74207042..74207824-chr4:74311798..74312657,3	MCF-7	breast:
7	chr4:74206358..74209177-chr4:74518525..74521196,2	K562	blood:
8	chr21:41753311..41755433-chr4:74205475..74208182,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249976	TF binding region
ENSG00000235123	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849293	1.00[EUR][1000 genomes]
rs16849296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849331	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849365	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849372	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4274815	1.00[EUR][1000 genomes]
rs4336191	1.00[EUR][1000 genomes]
rs4345145	1.00[EUR][1000 genomes]
rs4408930	1.00[EUR][1000 genomes]
rs4429705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478153	1.00[EUR][1000 genomes]
rs4510441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4602471	0.92[EUR][1000 genomes]
rs4694161	0.96[EUR][1000 genomes]
rs4694162	1.00[EUR][1000 genomes]
rs4694614	0.85[EUR][1000 genomes]
rs55637321	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55846325	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56058702	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56247439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446920	1.00[EUR][1000 genomes]
rs6446921	0.81[EUR][1000 genomes]
rs6446922	1.00[EUR][1000 genomes]
rs6446924	1.00[EUR][1000 genomes]
rs6446925	1.00[EUR][1000 genomes]
rs6819109	1.00[EUR][1000 genomes]
rs6821554	1.00[EUR][1000 genomes]
rs6828979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6844516	1.00[EUR][1000 genomes]
rs6853221	1.00[EUR][1000 genomes]
rs7670776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7675336	1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74204200-74207800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:74205800-74208800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:74206400-74208000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:74206400-74208000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:74207000-74207800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:74207000-74208600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:74207200-74207800	Enhancers	Fetal Intestine Large	intestine
8	chr4:74207200-74207800	Enhancers	Fetal Intestine Small	intestine
9	chr4:74207200-74208000	Flanking Active TSS	HepG2	liver
10	chr4:74207400-74207800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:74207400-74208000	Flanking Active TSS	Liver	Liver

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