Variant report

Variant	rs6446920
Chromosome Location	chr4:74193463-74193464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	1.00[EUR][1000 genomes]
rs16849271	1.00[EUR][1000 genomes]
rs16849274	1.00[EUR][1000 genomes]
rs16849279	1.00[EUR][1000 genomes]
rs16849282	1.00[EUR][1000 genomes]
rs16849284	1.00[EUR][1000 genomes]
rs16849287	1.00[EUR][1000 genomes]
rs16849292	1.00[EUR][1000 genomes]
rs16849293	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849296	1.00[EUR][1000 genomes]
rs16849298	1.00[EUR][1000 genomes]
rs16849331	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16849365	0.85[EUR][1000 genomes]
rs16849372	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4274815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4336191	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4345145	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4408930	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4429705	1.00[EUR][1000 genomes]
rs4478153	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4510441	1.00[EUR][1000 genomes]
rs4602471	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4694161	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4694162	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4694614	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55637321	0.85[EUR][1000 genomes]
rs55846325	0.85[EUR][1000 genomes]
rs56058702	0.85[EUR][1000 genomes]
rs56247439	0.92[EUR][1000 genomes]
rs56285841	0.92[EUR][1000 genomes]
rs6446921	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6446922	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6446925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6819109	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6821554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828979	1.00[EUR][1000 genomes]
rs6844516	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6853221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670776	1.00[EUR][1000 genomes]
rs7675336	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74183400-74203000	Weak transcription	Liver	Liver
2	chr4:74193400-74194200	Enhancers	HepG2	liver

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