Variant report

Variant	rs4694614
Chromosome Location	chr4:74294545-74294546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16849265	0.85[EUR][1000 genomes]
rs16849271	0.85[EUR][1000 genomes]
rs16849274	0.85[EUR][1000 genomes]
rs16849279	0.85[EUR][1000 genomes]
rs16849282	0.85[EUR][1000 genomes]
rs16849284	0.85[EUR][1000 genomes]
rs16849287	0.85[EUR][1000 genomes]
rs16849292	0.85[EUR][1000 genomes]
rs16849293	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849296	0.85[EUR][1000 genomes]
rs16849298	0.85[EUR][1000 genomes]
rs16849331	1.00[EUR][1000 genomes]
rs16849365	1.00[EUR][1000 genomes]
rs16849372	1.00[EUR][1000 genomes]
rs4274815	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4336191	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4345145	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4408930	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4429705	0.85[EUR][1000 genomes]
rs4478153	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4510441	0.85[EUR][1000 genomes]
rs4694161	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4694162	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55637321	1.00[EUR][1000 genomes]
rs55846325	1.00[EUR][1000 genomes]
rs56058702	1.00[EUR][1000 genomes]
rs56247439	0.92[EUR][1000 genomes]
rs56285841	0.92[EUR][1000 genomes]
rs6446920	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6446922	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6446924	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6446925	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6819109	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6821554	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6828979	0.85[EUR][1000 genomes]
rs6844516	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6853221	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7670776	0.85[EUR][1000 genomes]
rs7675336	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv980527	chr4:74289660-74297406	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
2	chr4:74287400-74295400	Weak transcription	Liver	Liver
3	chr4:74291200-74297000	Enhancers	HepG2	liver
4	chr4:74292800-74296600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:74293200-74296600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:74294000-74295200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links