Variant report

Variant	rs16849331
Chromosome Location	chr4:74277908-74277909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr4:74276804-74278306	HepG2	liver:	n/a	n/a
2	MAFK	chr4:74277658-74277991	HepG2	liver:	n/a	n/a
3	MBD4	chr4:74276485-74278341	HepG2	liver:	n/a	n/a
4	ARID3A	chr4:74277177-74277971	HepG2	liver:	n/a	n/a
5	NFIC	chr4:74271609-74277969	HepG2	liver:	n/a	n/a
6	REST	chr4:74277663-74278206	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:74276640-74278528	HepG2	liver:	n/a	n/a
8	MAFF	chr4:74277630-74277958	HepG2	liver:	n/a	n/a
9	POLR2A	chr4:74276550-74278739	HepG2	liver:	n/a	n/a
10	MXI1	chr4:74277347-74278016	HepG2	liver:	n/a	n/a
11	MBD4	chr4:74269575-74278337	HepG2	liver:	n/a	n/a
12	POLR2A	chr4:74277308-74278143	HepG2	liver:	n/a	n/a
13	POLR2A	chr4:74277667-74278130	HepG2	liver:	n/a	n/a
14	MAFK	chr4:74277598-74277985	HepG2	liver:	n/a	n/a
15	MYBL2	chr4:74276419-74278363	HepG2	liver:	n/a	n/a
16	HEY1	chr4:74276540-74288412	HepG2	liver:	n/a	n/a
17	POLR2A	chr4:74276555-74278276	HepG2	liver:	n/a	n/a
18	POLR2A	chr4:74277707-74278264	K562	blood:	n/a	n/a
19	MYBL2	chr4:74277308-74278118	HepG2	liver:	n/a	n/a
20	NFIC	chr4:74277712-74278131	HepG2	liver:	n/a	n/a
21	HEY1	chr4:74277606-74278262	HepG2	liver:	n/a	n/a
22	POLR2A	chr4:74276655-74278151	HepG2	liver:	n/a	n/a
23	POLR2A	chr4:74269783-74288816	HepG2	liver:	n/a	n/a
24	POLR2A	chr4:74276474-74281098	HepG2	liver:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74276426..74278467-chr4:74310127..74311716,2	K562	blood:

No data

Variant related genes	Relation type
ALB	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16849265	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849271	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849274	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849279	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849282	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849284	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849287	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849292	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849293	0.85[EUR][1000 genomes]
rs16849296	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849298	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849365	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849372	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4274815	0.85[EUR][1000 genomes]
rs4336191	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4345145	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs4408930	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4429705	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4478153	0.85[EUR][1000 genomes]
rs4510441	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4694161	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs4694162	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4694614	1.00[EUR][1000 genomes]
rs55637321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55846325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56058702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446920	0.85[EUR][1000 genomes]
rs6446922	0.85[EUR][1000 genomes]
rs6446924	0.85[EUR][1000 genomes]
rs6446925	0.85[EUR][1000 genomes]
rs6819109	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6821554	0.85[EUR][1000 genomes]
rs6828979	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6844516	0.85[EUR][1000 genomes]
rs6853221	0.85[EUR][1000 genomes]
rs7670776	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7675336	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv879490	chr4:74258832-74285223	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879491	chr4:74275515-74292407	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74271600-74283200	Transcr. at gene 5' and 3'	HepG2	liver
2	chr4:74272000-74283400	Transcr. at gene 5' and 3'	Liver	Liver
3	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea

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