Variant report

Variant	rs16849282
Chromosome Location	chr4:74207946-74207947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr4:74207068-74207952	HepG2	liver:	n/a	chr4:74207274-74207288

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74206358..74209177-chr4:74518525..74521196,2	K562	blood:
2	chr21:41753311..41755433-chr4:74205475..74208182,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249976	TF binding region
ENSG00000235123	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16849265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849293	1.00[EUR][1000 genomes]
rs16849296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849331	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849365	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16849372	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4274815	1.00[EUR][1000 genomes]
rs4336191	1.00[EUR][1000 genomes]
rs4345145	1.00[EUR][1000 genomes]
rs4408930	1.00[EUR][1000 genomes]
rs4429705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478153	1.00[EUR][1000 genomes]
rs4510441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4602471	0.92[EUR][1000 genomes]
rs4694161	0.96[EUR][1000 genomes]
rs4694162	1.00[EUR][1000 genomes]
rs4694614	0.85[EUR][1000 genomes]
rs55637321	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55846325	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56058702	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56247439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56285841	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446920	1.00[EUR][1000 genomes]
rs6446921	0.81[EUR][1000 genomes]
rs6446922	1.00[EUR][1000 genomes]
rs6446924	1.00[EUR][1000 genomes]
rs6446925	1.00[EUR][1000 genomes]
rs6819109	1.00[EUR][1000 genomes]
rs6821554	1.00[EUR][1000 genomes]
rs6828979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6844516	1.00[EUR][1000 genomes]
rs6853221	1.00[EUR][1000 genomes]
rs7670776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7675336	1.00[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74205800-74208800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:74206400-74208000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:74206400-74208000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:74207000-74208600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:74207200-74208000	Flanking Active TSS	HepG2	liver
6	chr4:74207400-74208000	Flanking Active TSS	Liver	Liver
7	chr4:74207800-74208600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:74207800-74208600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:74207800-74209000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:74207800-74209000	Weak transcription	Pancreas	Pancrea
11	chr4:74207800-74209200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:74207800-74209600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links