The 2.0 version of rSNPBase

Variant report

Variant rs16878548
Chromosome Location chr5:60367626-60367627
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60326000-60400800 Weak transcription Left Ventricle heart
2 chr5:60347200-60379200 Weak transcription Ovary ovary
3 chr5:60349400-60370800 Weak transcription HSMM muscle
4 chr5:60350400-60371400 Weak transcription NHDF-Ad bronchial
5 chr5:60350600-60378600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr5:60350800-60396200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr5:60357800-60369000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:60362800-60377200 Weak transcription Psoas Muscle Psoas
9 chr5:60363000-60369200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr5:60365200-60372400 Weak transcription Dnd41 blood
11 chr5:60365600-60369200 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr5:60365600-60376400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr5:60365600-60387000 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr5:60366400-60397400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr5:60366800-60368200 Enhancers Fetal Kidney kidney
16 chr5:60367000-60367800 Enhancers Stomach Mucosa stomach
17 chr5:60367000-60368000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr5:60367000-60368000 Enhancers HUES48 Cell Line embryonic stem cell
19 chr5:60367000-60368000 Enhancers HUES64 Cell Line embryonic stem cell
20 chr5:60367000-60368000 Enhancers iPS-18 Cell Line embryonic stem cell
21 chr5:60367000-60368200 Enhancers Fetal Intestine Small intestine
22 chr5:60367200-60369000 Weak transcription Primary B cells from peripheral blood blood
23 chr5:60367200-60382200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr5:60367400-60367800 Enhancers Pancreatic Islets Pancreatic Islet
25 chr5:60367400-60369200 Weak transcription Primary T cells fromperipheralblood blood
26 chr5:60367400-60369800 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr5:60367400-60379400 Weak transcription HMEC breast
28 chr5:60367400-60385200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr5:60367400-60386800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr5:60367400-60399400 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr5:60367600-60369200 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr5:60367600-60369200 Weak transcription Duodenum Mucosa Duodenum
33 chr5:60367600-60370600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr5:60367600-60370800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr5:60367600-60372200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr5:60367600-60372600 Weak transcription NHEK skin
37 chr5:60367600-60378400 Weak transcription Primary T cells from cord blood blood
38 chr5:60367600-60380000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr5:60367600-60380000 Weak transcription Liver Liver
40 chr5:60367600-60398400 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015