The 2.0 version of rSNPBase

Variant report

Variant rs42437
Chromosome Location chr5:60348046-60348047
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60324600-60354000 Weak transcription Primary T cells from cord blood blood
2 chr5:60326000-60400800 Weak transcription Left Ventricle heart
3 chr5:60339800-60348200 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr5:60344800-60353400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:60345600-60350800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr5:60345800-60349600 Enhancers Fetal Intestine Large intestine
7 chr5:60345800-60349600 Enhancers Fetal Intestine Small intestine
8 chr5:60346200-60349200 Enhancers NH-A brain
9 chr5:60346200-60349400 Enhancers HSMM muscle
10 chr5:60346200-60349600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
11 chr5:60346200-60350400 Enhancers NHDF-Ad bronchial
12 chr5:60346400-60350000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr5:60346400-60350200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:60346400-60350400 Enhancers HMEC breast
15 chr5:60346400-60350400 Enhancers Osteobl bone
16 chr5:60346600-60350400 Enhancers NHEK skin
17 chr5:60346800-60349600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr5:60346800-60350400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr5:60346800-60350600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr5:60347000-60349000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr5:60347000-60350000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:60347000-60350600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
23 chr5:60347200-60349600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr5:60347200-60379200 Weak transcription Ovary ovary
25 chr5:60347400-60348400 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr5:60347400-60348600 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr5:60347400-60348600 Weak transcription iPS-15b Cell Line embryonic stem cell
28 chr5:60347400-60348800 Weak transcription Placenta Amnion Placenta Amnion
29 chr5:60347400-60349800 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr5:60347400-60351400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr5:60347400-60353000 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr5:60347400-60356000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr5:60347600-60348600 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr5:60347600-60348600 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr5:60347600-60348600 Weak transcription NHLF lung
36 chr5:60347600-60349000 Enhancers Muscle Satellite Cultured Cells --
37 chr5:60347800-60348400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
38 chr5:60347800-60348600 Enhancers A549 lung
39 chr5:60347800-60348800 Weak transcription HUVEC blood vessel
40 chr5:60347800-60353000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr5:60348000-60348400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr5:60348000-60348400 Weak transcription Hela-S3 cervix
43 chr5:60348000-60349000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015