Variant report

Variant	rs16879428
Chromosome Location	chr8:110412411-110412412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110410046..110413726-chr8:110422893..110425486,3	K562	blood:
2	chr8:110401286..110403150-chr8:110410223..110413005,2	MCF-7	breast:
3	chr8:110403354..110405591-chr8:110412229..110414153,2	K562	blood:
4	chr8:110411451..110413359-chr8:110418061..110419801,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16879299	1.00[MKK][hapmap]
rs16879336	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879553	1.00[ASW][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs16879567	1.00[AMR][1000 genomes]
rs16879636	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs1892762	1.00[AMR][1000 genomes]
rs1979299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1979300	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124980	1.00[AMR][1000 genomes]
rs55752435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56238419	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56932873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170073	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57937650	1.00[AMR][1000 genomes]
rs59326650	1.00[AMR][1000 genomes]
rs59478583	1.00[AMR][1000 genomes]
rs59982879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60463599	1.00[AMR][1000 genomes]
rs73700649	1.00[AMR][1000 genomes]
rs73700650	1.00[AMR][1000 genomes]
rs73700652	1.00[AMR][1000 genomes]
rs73700655	1.00[AMR][1000 genomes]
rs73700858	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700860	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704006	1.00[AMR][1000 genomes]
rs73704009	1.00[AMR][1000 genomes]
rs73704016	1.00[AMR][1000 genomes]
rs73704022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv1845153	chr8:110397738-110421793	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832336	chr8:110397738-110437384	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110409400-110414200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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