Variant report
| Variant | rs59982879 |
|---|---|
| Chromosome Location | chr8:110393117-110393118 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110391499..110394340-chr8:110396610..110400316,3 | K562 | blood: | |
| 2 | chr8:110392136..110393759-chr8:110551713..110554181,2 | K562 | blood: | |
| 3 | chr8:110388617..110395072-chr8:110396032..110405839,11 | K562 | blood: | |
| 4 | chr8:110373158..110374661-chr8:110392938..110394946,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147654 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16879336 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16879428 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16879553 | 1.00[AMR][1000 genomes] |
| rs16879567 | 1.00[AMR][1000 genomes] |
| rs16879636 | 1.00[AMR][1000 genomes] |
| rs1892762 | 1.00[AMR][1000 genomes] |
| rs1979299 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1979300 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2124980 | 1.00[AMR][1000 genomes] |
| rs55752435 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56238419 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56932873 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57170073 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57937650 | 1.00[AMR][1000 genomes] |
| rs59326650 | 1.00[AMR][1000 genomes] |
| rs59478583 | 1.00[AMR][1000 genomes] |
| rs60463599 | 1.00[AMR][1000 genomes] |
| rs73700649 | 1.00[AMR][1000 genomes] |
| rs73700650 | 1.00[AMR][1000 genomes] |
| rs73700652 | 1.00[AMR][1000 genomes] |
| rs73700655 | 1.00[AMR][1000 genomes] |
| rs73700858 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700860 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700867 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700869 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700876 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700886 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73704006 | 1.00[AMR][1000 genomes] |
| rs73704009 | 1.00[AMR][1000 genomes] |
| rs73704016 | 1.00[AMR][1000 genomes] |
| rs73704022 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891273 | chr8:110219735-110475874 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv891279 | chr8:110268104-110450092 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv891280 | chr8:110346363-110465481 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv972244 | chr8:110389671-110400955 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
