Variant report

Variant	rs16971585
Chromosome Location	chr17:34183905-34183906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34182343..34187785-chr17:34188649..34193605,6	K562	blood:

Variant related genes	Relation type
ENSG00000172660	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1065341	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963927	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971620	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971624	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2735479	0.90[EUR][1000 genomes]
rs2735482	0.90[EUR][1000 genomes]
rs2735483	0.90[EUR][1000 genomes]
rs28912069	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28914812	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914818	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251744	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536691	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61590868	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7209512	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224965	0.92[EUR][1000 genomes]
rs8073456	0.87[EUR][1000 genomes]
rs965984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:34161800-34186200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr17:34163800-34184600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:34170200-34192800	Weak transcription	Small Intestine	intestine
6	chr17:34172200-34184000	Weak transcription	Colonic Mucosa	Colon
7	chr17:34172200-34193600	Weak transcription	Right Ventricle	heart
8	chr17:34172800-34193600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr17:34174400-34184200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:34175000-34184400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr17:34175400-34185000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:34175400-34186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr17:34175400-34186400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr17:34175400-34192200	Weak transcription	Gastric	stomach
15	chr17:34175600-34186200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr17:34175600-34193000	Weak transcription	NH-A	brain
17	chr17:34175600-34193600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr17:34175600-34202400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:34175800-34187600	Weak transcription	Fetal Lung	lung
20	chr17:34176200-34190000	Weak transcription	Spleen	Spleen
21	chr17:34176400-34185400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr17:34176400-34192600	Weak transcription	Fetal Intestine Small	intestine
23	chr17:34176800-34193200	Weak transcription	Fetal Brain Female	brain
24	chr17:34177000-34184000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr17:34177200-34202400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:34177400-34184200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr17:34177400-34184400	Weak transcription	Colon Smooth Muscle	Colon
28	chr17:34177400-34185000	Weak transcription	Brain Substantia Nigra	brain
29	chr17:34177400-34185800	Weak transcription	Primary B cells from cord blood	blood
30	chr17:34177400-34186400	Weak transcription	Brain Angular Gyrus	brain
31	chr17:34177400-34191000	Weak transcription	Brain Anterior Caudate	brain
32	chr17:34177400-34192200	Weak transcription	Lung	lung
33	chr17:34177400-34193000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr17:34177400-34193200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr17:34177400-34193200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr17:34177400-34193200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr17:34177400-34198400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr17:34177600-34185400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr17:34177800-34198200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:34178000-34193600	Weak transcription	Left Ventricle	heart
41	chr17:34178200-34193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr17:34178600-34185200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr17:34178800-34185600	Weak transcription	Dnd41	blood
44	chr17:34178800-34185600	Weak transcription	HMEC	breast
45	chr17:34178800-34186400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr17:34178800-34187200	Weak transcription	Fetal Kidney	kidney
47	chr17:34178800-34188600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr17:34179000-34193400	Weak transcription	Osteobl	bone
49	chr17:34179000-34203800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:34179600-34184400	Strong transcription	Stomach Smooth Muscle	stomach

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