Variant report

Variant	rs59536691
Chromosome Location	chr17:34224360-34224361
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34219635..34221584-chr17:34223774..34226661,2	MCF-7	breast:
2	chr17:34215497..34218658-chr17:34224334..34228047,3	K562	blood:

Variant related genes	Relation type
ENSG00000223255	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1065341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16963927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971570	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971585	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971600	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971620	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735479	0.95[EUR][1000 genomes]
rs2735482	0.95[EUR][1000 genomes]
rs2735483	0.95[EUR][1000 genomes]
rs28912069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28914812	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28914818	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4251744	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4251776	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61590868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209512	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7224965	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8073456	0.82[EUR][1000 genomes]
rs965984	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34217600-34225000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr17:34217600-34225800	Weak transcription	Fetal Muscle Leg	muscle
3	chr17:34217600-34227600	Weak transcription	NH-A	brain
4	chr17:34218400-34224800	Weak transcription	Dnd41	blood
5	chr17:34218400-34227600	Weak transcription	Fetal Intestine Small	intestine
6	chr17:34219600-34224400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:34219600-34225000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:34219600-34225000	Weak transcription	NHEK	skin
9	chr17:34219600-34227400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:34222400-34224400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr17:34222400-34230200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:34222600-34227200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr17:34223000-34224400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:34223000-34230400	Enhancers	Fetal Thymus	thymus
15	chr17:34223200-34227600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr17:34223400-34224400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:34223400-34225000	Weak transcription	K562	blood
18	chr17:34223400-34225200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr17:34223400-34225800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr17:34223400-34227400	Weak transcription	HSMMtube	muscle
21	chr17:34223400-34229200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr17:34223600-34225000	Weak transcription	Primary T cells from cord blood	blood
23	chr17:34223600-34225000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:34223600-34225000	Weak transcription	Thymus	Thymus
25	chr17:34223600-34226200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr17:34223600-34227400	Weak transcription	Osteobl	bone
27	chr17:34223800-34225000	Weak transcription	GM12878-XiMat	blood
28	chr17:34223800-34225800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:34223800-34226600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:34223800-34227400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr17:34223800-34228200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:34224000-34224400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr17:34224000-34224400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr17:34224000-34225000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr17:34224000-34225400	Weak transcription	Placenta	Placenta
36	chr17:34224000-34225800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr17:34224200-34225000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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