Variant report

Variant	rs28914818
Chromosome Location	chr17:34197273-34197274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34196970..34199570-chr17:34207098..34208624,2	K562	blood:
2	chr17:34176733..34179011-chr17:34196507..34198482,2	K562	blood:

Variant related genes	Relation type
ENSG00000161570	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1065341	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971570	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971585	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971600	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971620	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971624	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2735479	0.88[EUR][1000 genomes]
rs2735482	0.88[EUR][1000 genomes]
rs2735483	0.88[EUR][1000 genomes]
rs28912069	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28914812	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251744	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251776	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536691	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61590868	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7209512	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224965	0.90[EUR][1000 genomes]
rs8073456	0.84[EUR][1000 genomes]
rs965984	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34175600-34202400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr17:34177200-34202400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:34177400-34198400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:34177800-34198200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:34179000-34203800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:34180600-34198200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr17:34180800-34202000	Weak transcription	GM12878-XiMat	blood
8	chr17:34183800-34198200	Weak transcription	Pancreas	Pancrea
9	chr17:34185800-34206800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr17:34186600-34198400	Weak transcription	Fetal Muscle Leg	muscle
11	chr17:34186800-34201600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:34191400-34198000	Weak transcription	Primary T cells from cord blood	blood
13	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr17:34192400-34198000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr17:34192400-34213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:34192600-34198200	Weak transcription	Spleen	Spleen
17	chr17:34193600-34197800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr17:34193600-34198000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:34193800-34198000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr17:34193800-34198200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr17:34193800-34198200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr17:34193800-34198200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:34193800-34198200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:34193800-34198200	Weak transcription	Adipose Nuclei	Adipose
25	chr17:34193800-34198200	Weak transcription	HUVEC	blood vessel
26	chr17:34193800-34198200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr17:34193800-34198400	Weak transcription	Placenta	Placenta
28	chr17:34193800-34201600	Weak transcription	HSMMtube	muscle
29	chr17:34194000-34205800	Weak transcription	K562	blood
30	chr17:34196000-34197800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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