The 2.0 version of rSNPBase

Variant report

Variant rs17071596
Chromosome Location chr13:80122349-80122350
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:80066800-80122800 Weak transcription Esophagus oesophagus
2 chr13:80083000-80122800 Weak transcription Stomach Mucosa stomach
3 chr13:80087400-80134000 Weak transcription Aorta Aorta
4 chr13:80087400-80134600 Weak transcription Pancreas Pancrea
5 chr13:80097200-80122800 Weak transcription Fetal Lung lung
6 chr13:80098400-80123200 Weak transcription Fetal Kidney kidney
7 chr13:80098600-80135000 Weak transcription Placenta Placenta
8 chr13:80099400-80133200 Weak transcription Psoas Muscle Psoas
9 chr13:80100600-80136400 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr13:80100800-80133200 Weak transcription Hela-S3 cervix
11 chr13:80101000-80123400 Weak transcription HMEC breast
12 chr13:80101800-80133200 Weak transcription Primary T cells from cord blood blood
13 chr13:80102200-80133600 Weak transcription Gastric stomach
14 chr13:80104800-80133600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr13:80108400-80132200 Weak transcription A549 lung
16 chr13:80109000-80123200 Weak transcription NH-A brain
17 chr13:80109000-80129400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr13:80109000-80133200 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr13:80109000-80133200 Weak transcription HSMM muscle
20 chr13:80109200-80123000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr13:80109200-80123000 Weak transcription Fetal Heart heart
22 chr13:80109200-80133200 Weak transcription Muscle Satellite Cultured Cells --
23 chr13:80109600-80123200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr13:80109600-80133200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr13:80109800-80128000 Weak transcription NHDF-Ad bronchial
26 chr13:80109800-80131600 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr13:80110000-80122800 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr13:80110600-80133200 Weak transcription Brain Inferior Temporal Lobe brain
29 chr13:80112600-80122800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr13:80112600-80131800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr13:80112600-80133200 Weak transcription Osteobl bone
32 chr13:80113200-80123600 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr13:80113200-80123600 Weak transcription Fetal Intestine Small intestine
34 chr13:80113200-80131600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr13:80113200-80133800 Weak transcription Left Ventricle heart
36 chr13:80114400-80130600 Weak transcription NHEK skin
37 chr13:80114400-80131600 Weak transcription Duodenum Mucosa Duodenum
38 chr13:80114600-80131800 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr13:80115000-80123200 Weak transcription Fetal Intestine Large intestine
40 chr13:80115000-80133800 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr13:80115200-80127800 Strong transcription Dnd41 blood
42 chr13:80117800-80123600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr13:80117800-80123600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr13:80119800-80122400 Enhancers Liver Liver
45 chr13:80120200-80132000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr13:80120200-80134200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr13:80121800-80123800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr13:80121800-80124200 Enhancers Cortex derived primary cultured neurospheres brain
49 chr13:80122000-80123600 Weak transcription HSMMtube muscle
50 chr13:80122000-80133200 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015