Variant report

Variant	rs61464969
Chromosome Location	chr13:80159739-80159740
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs17071373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071564	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071576	1.00[AMR][1000 genomes]
rs17071581	1.00[AMR][1000 genomes]
rs17071592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071596	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071601	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071609	1.00[AMR][1000 genomes]
rs17071610	1.00[AMR][1000 genomes]
rs17071613	1.00[AMR][1000 genomes]
rs17071624	1.00[AMR][1000 genomes]
rs55887763	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56737007	1.00[AMR][1000 genomes]
rs56823234	1.00[AMR][1000 genomes]
rs57066341	1.00[AMR][1000 genomes]
rs57068944	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57560404	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57603166	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57615648	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57863151	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58006070	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58088304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58260634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58322995	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58325260	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58379158	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58833188	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58930697	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59105864	1.00[AMR][1000 genomes]
rs59232955	1.00[AMR][1000 genomes]
rs59245717	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59331936	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59604922	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59945183	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60119719	0.84[AFR][1000 genomes]
rs60183984	1.00[AMR][1000 genomes]
rs60240323	1.00[AMR][1000 genomes]
rs60575675	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60827595	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61216430	1.00[AMR][1000 genomes]
rs61368443	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7139938	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323341	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7324225	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7328479	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7332059	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7332241	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7337248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548917	1.00[AMR][1000 genomes]
rs73548923	1.00[AMR][1000 genomes]
rs73548924	1.00[AMR][1000 genomes]
rs73548926	1.00[AMR][1000 genomes]
rs73548938	1.00[AMR][1000 genomes]
rs73548941	1.00[AMR][1000 genomes]
rs73548942	1.00[AMR][1000 genomes]
rs73549001	1.00[AMR][1000 genomes]
rs73551505	1.00[AMR][1000 genomes]
rs73551522	1.00[AMR][1000 genomes]
rs73551530	1.00[AMR][1000 genomes]
rs73551537	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551544	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551547	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551551	1.00[AMR][1000 genomes]
rs73551555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551563	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551566	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551569	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551570	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551575	1.00[AMR][1000 genomes]
rs73551578	1.00[AMR][1000 genomes]
rs73551581	1.00[AMR][1000 genomes]
rs73551583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551589	1.00[AMR][1000 genomes]
rs73551592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551599	1.00[AMR][1000 genomes]
rs73553407	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553414	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553416	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553419	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553423	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553442	1.00[AMR][1000 genomes]
rs73553454	1.00[AMR][1000 genomes]
rs73553459	1.00[AMR][1000 genomes]
rs73564691	1.00[AMR][1000 genomes]
rs73566444	1.00[AMR][1000 genomes]
rs74098262	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74100736	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7983904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7988143	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7990488	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80159200-80160400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80159600-80163000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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