The 2.0 version of rSNPBase

Variant report

Variant rs60827595
Chromosome Location chr13:80068568-80068569
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:80056200-80077400 Weak transcription Right Ventricle heart
2 chr13:80059000-80077200 Weak transcription Small Intestine intestine
3 chr13:80059600-80068800 Weak transcription Brain Substantia Nigra brain
4 chr13:80060000-80075600 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr13:80061200-80071200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr13:80062000-80075800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr13:80063400-80077200 Weak transcription K562 blood
8 chr13:80064600-80069000 Enhancers HUES6 Cell Line embryonic stem cell
9 chr13:80064600-80069000 Enhancers HUES64 Cell Line embryonic stem cell
10 chr13:80064800-80069000 Enhancers HUES48 Cell Line embryonic stem cell
11 chr13:80064800-80069000 Enhancers Rectal Mucosa Donor 31 rectum
12 chr13:80064800-80069800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr13:80064800-80084800 Weak transcription Fetal Intestine Small intestine
14 chr13:80065000-80068800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr13:80066400-80069400 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr13:80066600-80068600 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr13:80066600-80069000 Enhancers Brain Angular Gyrus brain
18 chr13:80066600-80069200 Flanking Active TSS NHEK skin
19 chr13:80066800-80068800 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr13:80066800-80068800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr13:80066800-80068800 Enhancers Liver Liver
22 chr13:80066800-80071400 Weak transcription Stomach Mucosa stomach
23 chr13:80066800-80073000 Weak transcription Aorta Aorta
24 chr13:80066800-80084000 Weak transcription Pancreas Pancrea
25 chr13:80066800-80122800 Weak transcription Esophagus oesophagus
26 chr13:80067000-80069400 Weak transcription Colon Smooth Muscle Colon
27 chr13:80067000-80069800 Weak transcription GM12878-XiMat blood
28 chr13:80067000-80071200 Weak transcription Psoas Muscle Psoas
29 chr13:80067000-80071400 Weak transcription H9 Cell Line embryonic stem cell
30 chr13:80067200-80071000 Enhancers Hela-S3 cervix
31 chr13:80067200-80095000 Weak transcription HSMM muscle
32 chr13:80067400-80069000 Weak transcription HSMMtube muscle
33 chr13:80067400-80071200 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr13:80067400-80079400 Weak transcription Brain Hippocampus Middle brain
35 chr13:80067600-80071200 Weak transcription H1 Cell Line embryonic stem cell
36 chr13:80067600-80071400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr13:80067600-80071400 Weak transcription Duodenum Mucosa Duodenum
38 chr13:80067600-80077400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr13:80067800-80068600 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr13:80067800-80068800 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr13:80067800-80068800 Weak transcription A549 lung
42 chr13:80067800-80069000 Enhancers Primary T helper cells PMA-I stimulated --
43 chr13:80067800-80070200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr13:80067800-80071000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr13:80067800-80071200 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr13:80067800-80071400 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr13:80067800-80076000 Weak transcription Fetal Heart heart
48 chr13:80068000-80069600 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr13:80068000-80069800 Weak transcription Primary T killer memory cells from peripheral blood blood
50 chr13:80068000-80071200 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015