Variant report

Variant	rs73553459
Chromosome Location	chr13:80138753-80138754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr13:80138653-80138994	GM12891	blood:	n/a	n/a
2	SPI1	chr13:80138692-80138894	GM12878	blood:	n/a	n/a
3	SPI1	chr13:80138613-80138924	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
LINC01068	TF binding region

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs17071373	1.00[AMR][1000 genomes]
rs17071564	1.00[AMR][1000 genomes]
rs17071576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071581	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071592	1.00[AMR][1000 genomes]
rs17071596	1.00[AMR][1000 genomes]
rs17071599	1.00[AMR][1000 genomes]
rs17071601	1.00[AMR][1000 genomes]
rs17071609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55887763	1.00[AMR][1000 genomes]
rs56737007	1.00[AMR][1000 genomes]
rs56823234	1.00[AMR][1000 genomes]
rs57066341	1.00[AMR][1000 genomes]
rs57068944	1.00[AMR][1000 genomes]
rs57560404	1.00[AMR][1000 genomes]
rs57603166	1.00[AMR][1000 genomes]
rs57615648	1.00[AMR][1000 genomes]
rs57863151	1.00[AMR][1000 genomes]
rs58006070	1.00[AMR][1000 genomes]
rs58088304	1.00[AMR][1000 genomes]
rs58260634	1.00[AMR][1000 genomes]
rs58322995	1.00[AMR][1000 genomes]
rs58325260	1.00[AMR][1000 genomes]
rs58379158	1.00[AMR][1000 genomes]
rs58833188	1.00[AMR][1000 genomes]
rs58930697	1.00[AMR][1000 genomes]
rs59105864	1.00[AMR][1000 genomes]
rs59232955	1.00[AMR][1000 genomes]
rs59245717	1.00[AMR][1000 genomes]
rs59331936	1.00[AMR][1000 genomes]
rs59604922	1.00[AMR][1000 genomes]
rs59945183	1.00[AMR][1000 genomes]
rs60183984	1.00[AMR][1000 genomes]
rs60240323	1.00[AMR][1000 genomes]
rs60575675	1.00[AMR][1000 genomes]
rs60827595	1.00[AMR][1000 genomes]
rs61216430	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61368443	1.00[AMR][1000 genomes]
rs61464969	1.00[AMR][1000 genomes]
rs7139938	1.00[AMR][1000 genomes]
rs7323341	1.00[AMR][1000 genomes]
rs7324225	1.00[AMR][1000 genomes]
rs7328479	1.00[AMR][1000 genomes]
rs7332059	1.00[AMR][1000 genomes]
rs7332241	1.00[AMR][1000 genomes]
rs7337248	1.00[AMR][1000 genomes]
rs73548917	1.00[AMR][1000 genomes]
rs73548923	1.00[AMR][1000 genomes]
rs73548924	1.00[AMR][1000 genomes]
rs73548926	1.00[AMR][1000 genomes]
rs73548938	1.00[AMR][1000 genomes]
rs73548941	1.00[AMR][1000 genomes]
rs73548942	1.00[AMR][1000 genomes]
rs73549001	1.00[AMR][1000 genomes]
rs73551505	1.00[AMR][1000 genomes]
rs73551522	1.00[AMR][1000 genomes]
rs73551530	1.00[AMR][1000 genomes]
rs73551537	1.00[AMR][1000 genomes]
rs73551544	1.00[AMR][1000 genomes]
rs73551547	1.00[AMR][1000 genomes]
rs73551548	1.00[AMR][1000 genomes]
rs73551551	1.00[AMR][1000 genomes]
rs73551555	1.00[AMR][1000 genomes]
rs73551562	1.00[AMR][1000 genomes]
rs73551563	1.00[AMR][1000 genomes]
rs73551564	1.00[AMR][1000 genomes]
rs73551566	1.00[AMR][1000 genomes]
rs73551567	1.00[AMR][1000 genomes]
rs73551569	1.00[AMR][1000 genomes]
rs73551570	1.00[AMR][1000 genomes]
rs73551575	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551578	1.00[AMR][1000 genomes]
rs73551581	1.00[AMR][1000 genomes]
rs73551583	1.00[AMR][1000 genomes]
rs73551589	1.00[AMR][1000 genomes]
rs73551592	1.00[AMR][1000 genomes]
rs73551599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553407	1.00[AMR][1000 genomes]
rs73553414	1.00[AMR][1000 genomes]
rs73553416	1.00[AMR][1000 genomes]
rs73553419	1.00[AMR][1000 genomes]
rs73553423	1.00[AMR][1000 genomes]
rs73553442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73564691	1.00[AMR][1000 genomes]
rs73566444	1.00[AMR][1000 genomes]
rs74098262	1.00[AMR][1000 genomes]
rs74100736	1.00[AMR][1000 genomes]
rs7983904	1.00[AMR][1000 genomes]
rs7988143	1.00[AMR][1000 genomes]
rs7990488	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80134000-80138800	Weak transcription	Left Ventricle	heart
2	chr13:80135600-80147200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:80138400-80139200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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