The 2.0 version of rSNPBase

Variant report

Variant rs58006070
Chromosome Location chr13:80087276-80087277
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:80066800-80122800 Weak transcription Esophagus oesophagus
2 chr13:80067200-80095000 Weak transcription HSMM muscle
3 chr13:80070600-80096600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr13:80076000-80099200 Weak transcription Hela-S3 cervix
5 chr13:80076200-80093200 Weak transcription HMEC breast
6 chr13:80077600-80088800 Weak transcription Brain Angular Gyrus brain
7 chr13:80077600-80095600 Weak transcription Fetal Intestine Large intestine
8 chr13:80077800-80089000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr13:80078000-80097200 Weak transcription Psoas Muscle Psoas
10 chr13:80078000-80097800 Weak transcription Ovary ovary
11 chr13:80078200-80088600 Weak transcription Fetal Heart heart
12 chr13:80078200-80102000 Weak transcription Right Ventricle heart
13 chr13:80079600-80098200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr13:80082800-80092400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr13:80082800-80096600 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr13:80082800-80096600 Weak transcription Lung lung
17 chr13:80082800-80108000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr13:80083000-80087400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr13:80083000-80088800 Weak transcription Small Intestine intestine
20 chr13:80083000-80095200 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr13:80083000-80120000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr13:80083000-80122800 Weak transcription Stomach Mucosa stomach
23 chr13:80083200-80095000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr13:80083200-80095000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr13:80083400-80092200 Weak transcription NHEK skin
26 chr13:80083400-80093000 Weak transcription Right Atrium heart
27 chr13:80083400-80096200 Weak transcription Left Ventricle heart
28 chr13:80084600-80087400 Enhancers Pancreas Pancrea
29 chr13:80085000-80093000 Weak transcription Fetal Intestine Small intestine
30 chr13:80085000-80096800 Weak transcription Primary T cells from cord blood blood
31 chr13:80085200-80087400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr13:80085800-80087400 Enhancers Liver Liver
33 chr13:80085800-80087400 Genic enhancers Dnd41 blood
34 chr13:80086000-80090800 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr13:80086200-80091000 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr13:80086600-80087400 Enhancers Gastric stomach
37 chr13:80086800-80087400 Enhancers Aorta Aorta
38 chr13:80086800-80098400 Weak transcription Brain Substantia Nigra brain
39 chr13:80087000-80095000 Weak transcription Duodenum Mucosa Duodenum
40 chr13:80087200-80087400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr13:80087200-80087800 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015