Variant report

Variant	rs73551505
Chromosome Location	chr13:80050378-80050379
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr13:80050360-80050513	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80044193..80046856-chr13:80049312..80052188,3	K562	blood:

Variant related genes	Relation type
NDFIP2	TF binding region

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs17071373	1.00[AMR][1000 genomes]
rs17071564	1.00[AMR][1000 genomes]
rs17071576	1.00[AMR][1000 genomes]
rs17071581	1.00[AMR][1000 genomes]
rs17071592	1.00[AMR][1000 genomes]
rs17071596	1.00[AMR][1000 genomes]
rs17071599	1.00[AMR][1000 genomes]
rs17071601	1.00[AMR][1000 genomes]
rs17071609	1.00[AMR][1000 genomes]
rs17071610	1.00[AMR][1000 genomes]
rs17071613	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071624	1.00[AMR][1000 genomes]
rs55887763	1.00[AMR][1000 genomes]
rs56737007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56823234	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57066341	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57068944	1.00[AMR][1000 genomes]
rs57560404	1.00[AMR][1000 genomes]
rs57603166	1.00[AMR][1000 genomes]
rs57615648	1.00[AMR][1000 genomes]
rs57863151	1.00[AMR][1000 genomes]
rs58006070	1.00[AMR][1000 genomes]
rs58088304	1.00[AMR][1000 genomes]
rs58260634	1.00[AMR][1000 genomes]
rs58322995	1.00[AMR][1000 genomes]
rs58325260	1.00[AMR][1000 genomes]
rs58379158	1.00[AMR][1000 genomes]
rs58833188	1.00[AMR][1000 genomes]
rs58930697	1.00[AMR][1000 genomes]
rs59105864	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59232955	1.00[AMR][1000 genomes]
rs59245717	1.00[AMR][1000 genomes]
rs59331936	1.00[AMR][1000 genomes]
rs59604922	1.00[AMR][1000 genomes]
rs59945183	1.00[AMR][1000 genomes]
rs60183984	1.00[AMR][1000 genomes]
rs60240323	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60575675	1.00[AMR][1000 genomes]
rs60827595	1.00[AMR][1000 genomes]
rs61216430	1.00[AMR][1000 genomes]
rs61368443	1.00[AMR][1000 genomes]
rs61464969	1.00[AMR][1000 genomes]
rs7139938	1.00[AMR][1000 genomes]
rs7323341	1.00[AMR][1000 genomes]
rs7324225	1.00[AMR][1000 genomes]
rs7328479	1.00[AMR][1000 genomes]
rs7332059	1.00[AMR][1000 genomes]
rs7332241	1.00[AMR][1000 genomes]
rs7337248	1.00[AMR][1000 genomes]
rs73548917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548942	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73549001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551530	1.00[AMR][1000 genomes]
rs73551533	0.96[AFR][1000 genomes]
rs73551537	1.00[AMR][1000 genomes]
rs73551544	1.00[AMR][1000 genomes]
rs73551547	1.00[AMR][1000 genomes]
rs73551548	1.00[AMR][1000 genomes]
rs73551551	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551555	1.00[AMR][1000 genomes]
rs73551562	1.00[AMR][1000 genomes]
rs73551563	1.00[AMR][1000 genomes]
rs73551564	1.00[AMR][1000 genomes]
rs73551566	1.00[AMR][1000 genomes]
rs73551567	1.00[AMR][1000 genomes]
rs73551569	1.00[AMR][1000 genomes]
rs73551570	1.00[AMR][1000 genomes]
rs73551575	1.00[AMR][1000 genomes]
rs73551578	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551581	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551583	1.00[AMR][1000 genomes]
rs73551589	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551592	1.00[AMR][1000 genomes]
rs73551599	1.00[AMR][1000 genomes]
rs73553407	1.00[AMR][1000 genomes]
rs73553414	1.00[AMR][1000 genomes]
rs73553416	1.00[AMR][1000 genomes]
rs73553419	1.00[AMR][1000 genomes]
rs73553423	1.00[AMR][1000 genomes]
rs73553442	1.00[AMR][1000 genomes]
rs73553454	1.00[AMR][1000 genomes]
rs73553459	1.00[AMR][1000 genomes]
rs73564691	1.00[AMR][1000 genomes]
rs73566444	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74098262	1.00[AMR][1000 genomes]
rs74100736	1.00[AMR][1000 genomes]
rs7983904	1.00[AMR][1000 genomes]
rs7988143	1.00[AMR][1000 genomes]
rs7990488	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80048400-80053600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:80049800-80050400	Enhancers	Rectal Mucosa Donor 31	rectum

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