The 2.0 version of rSNPBase

Variant report

Variant rs73551530
Chromosome Location chr13:80058474-80058475
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:80054800-80059400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr13:80056000-80058800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr13:80056200-80058800 Weak transcription Small Intestine intestine
4 chr13:80056200-80059200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr13:80056200-80060600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr13:80056200-80060800 Weak transcription Gastric stomach
7 chr13:80056200-80063200 Weak transcription Left Ventricle heart
8 chr13:80056200-80066400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr13:80056200-80066600 Weak transcription Psoas Muscle Psoas
10 chr13:80056200-80077400 Weak transcription Right Ventricle heart
11 chr13:80056600-80058600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
12 chr13:80056600-80064200 Weak transcription Placenta Placenta
13 chr13:80056800-80058800 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr13:80056800-80059200 Weak transcription Pancreas Pancrea
15 chr13:80056800-80059600 Enhancers Brain Hippocampus Middle brain
16 chr13:80056800-80059600 Weak transcription Placenta Amnion Placenta Amnion
17 chr13:80056800-80061200 Enhancers Fetal Heart heart
18 chr13:80056800-80064000 Weak transcription Stomach Smooth Muscle stomach
19 chr13:80056800-80064400 Weak transcription Fetal Stomach stomach
20 chr13:80056800-80065800 Weak transcription Fetal Muscle Leg muscle
21 chr13:80057000-80058800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr13:80057000-80058800 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr13:80057000-80058800 Enhancers Liver Liver
24 chr13:80057000-80059000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr13:80057000-80059200 Enhancers HepG2 liver
26 chr13:80057000-80063600 Weak transcription Right Atrium heart
27 chr13:80057000-80066200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr13:80057200-80059200 Weak transcription Rectal Smooth Muscle rectum
29 chr13:80057200-80060600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr13:80057400-80058800 Weak transcription Adipose Nuclei Adipose
31 chr13:80057400-80059000 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr13:80057400-80059200 Weak transcription Esophagus oesophagus
33 chr13:80057400-80060800 Enhancers HSMM muscle
34 chr13:80057400-80063400 Weak transcription GM12878-XiMat blood
35 chr13:80057400-80064600 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr13:80057600-80059000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr13:80057600-80059200 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr13:80057600-80059200 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr13:80057600-80059200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr13:80057600-80059200 Weak transcription Colon Smooth Muscle Colon
41 chr13:80057600-80059200 Weak transcription Fetal Lung lung
42 chr13:80057600-80060000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr13:80057600-80061000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr13:80057600-80065400 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr13:80057600-80065600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr13:80057800-80058600 Weak transcription Brain Inferior Temporal Lobe brain
47 chr13:80057800-80058800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
48 chr13:80057800-80058800 Weak transcription Fetal Kidney kidney
49 chr13:80057800-80058800 Enhancers Hela-S3 cervix
50 chr13:80057800-80059000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015