Variant report

Variant	rs17194207
Chromosome Location	chr21:39968600-39968601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39967269..39970504-chr21:39970532..39972631,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17194186	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194214	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17285455	0.87[ASW][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2212597	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2212932	0.87[ASN][1000 genomes]
rs2836550	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836566	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836578	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2836580	0.90[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28465589	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28705162	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55651068	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56159937	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56871124	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58009060	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59304931	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60393496	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60914381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62217496	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8128621	0.89[EUR][1000 genomes]
rs973105	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9974074	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9974176	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9976303	0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs9977881	0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9980524	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39955800-39971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:39964400-39968800	Weak transcription	Spleen	Spleen
3	chr21:39965200-39969800	Weak transcription	Aorta	Aorta
4	chr21:39965400-39969400	Weak transcription	Fetal Brain Male	brain
5	chr21:39966800-39968600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr21:39966800-39968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr21:39967000-39971400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr21:39967400-39968600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr21:39968000-39968600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr21:39968200-39968600	Enhancers	NHEK	skin
11	chr21:39968200-39969000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr21:39968200-39969000	Bivalent Enhancer	NH-A	brain
13	chr21:39968200-39969200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr21:39968400-39968600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr21:39968400-39968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr21:39968400-39969000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr21:39968400-39969000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr21:39968400-39969000	Bivalent Enhancer	HepG2	liver
19	chr21:39968600-39968800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr21:39968600-39969000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr21:39968600-39969000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr21:39968600-39969000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr21:39968600-39969200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr21:39968600-39969400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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