Variant report

Variant	rs58009060
Chromosome Location	chr21:39995179-39995180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39991146..39992794-chr21:39993901..39996055,2	K562	blood:
2	chr21:39990821..39992376-chr21:39994985..39996602,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17194186	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17194207	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17194214	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17285455	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2212597	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2212932	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836550	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2836566	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2836578	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836580	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28465589	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28705162	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55651068	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56159937	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56871124	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59304931	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60393496	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60914381	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62217496	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs973105	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9974074	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9974176	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9976303	0.80[EUR][1000 genomes]
rs9977881	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9980524	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:39993200-39995600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr21:39993200-39996600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr21:39993800-39995600	Enhancers	HepG2	liver
5	chr21:39994400-39995200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr21:39994400-39995200	ZNF genes & repeats	Fetal Kidney	kidney
7	chr21:39994400-39995200	Enhancers	Gastric	stomach
8	chr21:39994400-39995200	Enhancers	Pancreas	Pancrea
9	chr21:39994600-39995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr21:39994600-39995600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr21:39994600-39996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr21:39994600-39996000	Weak transcription	Aorta	Aorta
13	chr21:39994800-39996000	Weak transcription	Spleen	Spleen
14	chr21:39995000-39995200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr21:39995000-39995200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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