Variant report

Variant	rs2836566
Chromosome Location	chr21:39976729-39976730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39973136..39976022-chr21:39976251..39978959,2	MCF-7	breast:
2	chr21:39976367..39979221-chr21:39982997..39985400,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17194186	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17194207	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17194214	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17285455	0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2212597	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212932	0.91[ASN][1000 genomes]
rs2836550	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836578	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2836580	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28465589	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28705162	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55651068	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56159937	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56871124	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58009060	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59304931	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60393496	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60914381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62217496	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8128621	0.89[EUR][1000 genomes]
rs973105	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9974074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9974176	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9976303	0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs9977881	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9980524	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39970200-39977200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr21:39973000-39982000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39974800-39977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr21:39975400-39977600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr21:39975600-39977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr21:39976000-39977200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr21:39976400-39977800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr21:39976600-39977000	Enhancers	Fetal Brain Male	brain
9	chr21:39976600-39977600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr21:39976600-39977800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr21:39976600-39977800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr21:39976600-39977800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr21:39976600-39978000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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