Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39968614..39970527-chr21:39974019..39976201,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17194186	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17194207	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17194214	0.91[ASN][1000 genomes]
rs17285455	0.86[ASN][1000 genomes]
rs2212597	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212932	0.91[ASN][1000 genomes]
rs2836550	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836566	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836578	0.89[ASN][1000 genomes]
rs2836580	0.86[ASN][1000 genomes]
rs28465589	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28705162	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55651068	0.87[ASN][1000 genomes]
rs56159937	0.88[ASN][1000 genomes]
rs56871124	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58009060	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59304931	0.91[ASN][1000 genomes]
rs60393496	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60914381	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62217496	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8128621	0.82[EUR][1000 genomes]
rs973105	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9974074	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9977881	0.90[ASN][1000 genomes]
rs9980524	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965955	chr21:39974678-39976565	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39969000-39976600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:39970200-39977200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr21:39970400-39976600	Weak transcription	Fetal Brain Male	brain
4	chr21:39973000-39982000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr21:39974800-39977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr21:39975400-39977600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr21:39975600-39977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr21:39976000-39976400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr21:39976000-39977200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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