Variant report

Variant	rs973105
Chromosome Location	chr21:39964199-39964200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39952017..39953838-chr21:39962654..39965463,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17194186	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17194207	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17194214	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17285455	0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2212597	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2212932	0.87[ASN][1000 genomes]
rs2255750	0.83[CEU][hapmap]
rs2836550	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2836566	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836578	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2836580	0.81[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28465589	0.87[ASN][1000 genomes]
rs28705162	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55651068	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56159937	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56871124	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58009060	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59304931	0.87[ASN][1000 genomes]
rs60393496	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60914381	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62217496	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8128621	0.87[EUR][1000 genomes]
rs9974074	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9974176	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9976303	0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs9977881	0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9980524	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378727	chr21:39964137-39964474	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39955800-39971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:39956600-39966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39961800-39964200	Weak transcription	Aorta	Aorta
4	chr21:39963800-39964400	Enhancers	Fetal Muscle Leg	muscle
5	chr21:39964000-39964400	Enhancers	Fetal Muscle Trunk	muscle
6	chr21:39964000-39964400	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links