Variant report

Variant	rs9980524
Chromosome Location	chr21:40008321-40008322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40006499..40008943-chr21:40009530..40012188,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17194186	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17194207	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17194214	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17285455	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2212597	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2212932	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2836550	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2836566	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2836578	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836580	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28465589	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28705162	0.86[ASN][1000 genomes]
rs55651068	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56159937	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56871124	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58009060	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59304931	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60393496	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60914381	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62217496	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs973105	0.86[ASN][1000 genomes]
rs9974074	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9974176	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9977881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40003000-40008600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr21:40003800-40014400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr21:40004200-40008800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr21:40006800-40008400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr21:40008200-40008400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:40008200-40008800	Enhancers	Aorta	Aorta
7	chr21:40008200-40010000	Enhancers	HMEC	breast

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