Variant report

Variant	rs17194214
Chromosome Location	chr21:40000787-40000788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39998710..40001241-chr21:40002564..40005457,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17194186	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17194207	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17285455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2212597	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2212932	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836550	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2836566	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2836578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836580	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28465589	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28705162	0.87[ASN][1000 genomes]
rs55651068	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56159937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56871124	0.93[ASN][1000 genomes]
rs58009060	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59304931	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60393496	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60914381	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62217496	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs973105	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9974074	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9974176	0.91[ASN][1000 genomes]
rs9976303	0.89[JPT][hapmap]
rs9977881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9980524	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39995200-40002400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:39996600-40001800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr21:40000000-40001000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr21:40000200-40000800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr21:40000600-40001400	Enhancers	Aorta	Aorta

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