Variant report

Variant	rs2836578
Chromosome Location	chr21:40003331-40003332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39998710..40001241-chr21:40002564..40005457,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17194186	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17194207	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17194214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17285455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2212597	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2212932	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836550	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2836566	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2836580	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28465589	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28705162	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55651068	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159937	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56871124	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58009060	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59304931	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60393496	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60914381	0.90[ASN][1000 genomes]
rs62217496	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs973105	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9974074	0.89[ASN][1000 genomes]
rs9974176	0.89[ASN][1000 genomes]
rs9976303	0.89[JPT][hapmap]
rs9977881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9980524	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40001800-40004000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr21:40002400-40003400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr21:40002400-40003800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr21:40002600-40003400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:40002600-40003400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr21:40002800-40003400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr21:40002800-40003400	Enhancers	HMEC	breast
8	chr21:40002800-40003600	Enhancers	Fetal Brain Male	brain
9	chr21:40002800-40003800	Bivalent Enhancer	HSMMtube	muscle
10	chr21:40003000-40003800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
11	chr21:40003000-40003800	Enhancers	Aorta	Aorta
12	chr21:40003000-40003800	Enhancers	NH-A	brain
13	chr21:40003000-40003800	Flanking Active TSS	Osteobl	bone
14	chr21:40003000-40008600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr21:40003200-40003800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr21:40003200-40004200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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