Variant report

Variant	rs55651068
Chromosome Location	chr21:39996577-39996578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39990350..39993337-chr21:39996090..39997790,2	MCF-7	breast:
2	chr21:39990821..39992376-chr21:39994985..39996602,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17194186	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17194207	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17194214	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17285455	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2212597	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2212932	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836550	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2836566	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2836578	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836580	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28465589	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28705162	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56159937	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56871124	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58009060	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59304931	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60393496	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60914381	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62217496	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs973105	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9974074	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9974176	0.87[ASN][1000 genomes]
rs9977881	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9980524	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:39993200-39996600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr21:39995200-39999200	Weak transcription	Gastric	stomach
4	chr21:39995200-40002400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr21:39995400-39996600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr21:39995400-39996600	Enhancers	Ovary	ovary
7	chr21:39995600-39996600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr21:39996000-39996600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr21:39996000-39996600	Enhancers	Aorta	Aorta
10	chr21:39996000-39996600	Enhancers	Spleen	Spleen

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