Variant report

Variant	rs1952107
Chromosome Location	chr13:96202195-96202196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:96202021-96202558	HepG2	liver:	n/a	chr13:96202138-96202155 chr13:96202139-96202152
2	CEBPB	chr13:96202054-96202198	K562	blood:	n/a	chr13:96202138-96202155 chr13:96202139-96202152

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96201255..96203740-chr13:96204747..96207433,2	MCF-7	breast:

Variant related genes	Relation type
CLDN10	TF binding region
ENSG00000134873	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs4771920	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773919	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs59483123	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72651928	0.89[EUR][1000 genomes]
rs7995795	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs8001332	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9516600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516601	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516602	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525011	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9525016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9525017	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525018	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525019	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525020	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525025	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9525026	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs9525028	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9525029	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs9525030	0.86[EUR][1000 genomes]
rs9525032	0.81[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96194600-96204200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:96194600-96204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:96200400-96204800	Weak transcription	A549	lung
4	chr13:96200800-96203200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:96201000-96204200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:96201600-96204400	Weak transcription	Spleen	Spleen
7	chr13:96201800-96202600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:96202000-96202600	Bivalent Enhancer	Fetal Lung	lung

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