Variant report

Variant	rs59483123
Chromosome Location	chr13:96206972-96206973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1952107	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4771920	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4771921	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4773919	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72651928	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995795	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8001332	0.91[EUR][1000 genomes]
rs9516600	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516601	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516602	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9525011	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9525016	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9525017	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9525018	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9525019	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9525020	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9525025	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9525026	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9525028	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9525029	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9525030	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9525032	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96204400-96207000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:96204400-96207000	Active TSS	Pancreas	Pancrea
3	chr13:96205000-96207000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:96205000-96207000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
5	chr13:96205400-96207000	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr13:96205600-96207200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr13:96205600-96210400	Weak transcription	A549	lung
8	chr13:96206200-96207000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr13:96206200-96209800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:96206400-96207000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
11	chr13:96206400-96207000	Bivalent Enhancer	HepG2	liver
12	chr13:96206600-96211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:96206800-96207000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr13:96206800-96207000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:96206800-96207000	Flanking Active TSS	Fetal Kidney	kidney
17	chr13:96206800-96207000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
18	chr13:96206800-96207200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr13:96206800-96207200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr13:96206800-96208600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell

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