Variant report

Variant	rs4773919
Chromosome Location	chr13:96253679-96253680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1000601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1952107	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs4771920	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4771921	0.89[EUR][1000 genomes]
rs59483123	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72651928	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7324901	1.00[YRI][hapmap]
rs7995795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8001332	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9516600	0.86[EUR][1000 genomes]
rs9516601	0.87[EUR][1000 genomes]
rs9516602	0.89[EUR][1000 genomes]
rs9525011	0.83[EUR][1000 genomes]
rs9525016	0.84[EUR][1000 genomes]
rs9525017	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs9525018	0.85[EUR][1000 genomes]
rs9525019	0.87[EUR][1000 genomes]
rs9525020	0.87[EUR][1000 genomes]
rs9525025	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9525026	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9525028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9525029	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525032	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:96229000-96256200	Weak transcription	Gastric	stomach
3	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
4	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
8	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr13:96238000-96256400	Weak transcription	Placenta	Placenta
10	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
11	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:96240200-96255800	Weak transcription	Fetal Intestine Large	intestine
16	chr13:96240200-96256000	Weak transcription	Fetal Intestine Small	intestine
17	chr13:96240200-96256200	Weak transcription	Aorta	Aorta
18	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
19	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
20	chr13:96243000-96253800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr13:96243200-96256200	Weak transcription	Fetal Brain Male	brain
22	chr13:96245400-96254400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:96246000-96254200	Weak transcription	NHDF-Ad	bronchial
24	chr13:96246400-96254200	Weak transcription	Fetal Lung	lung
25	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:96247200-96259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:96247200-96267000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr13:96247800-96255000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr13:96247800-96256000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:96247800-96261200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:96248000-96256200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:96248200-96256000	Weak transcription	Esophagus	oesophagus
35	chr13:96249000-96254000	Strong transcription	HSMM	muscle
36	chr13:96249000-96264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:96249800-96254400	Weak transcription	HMEC	breast
39	chr13:96249800-96255200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr13:96251400-96255200	Strong transcription	Brain Germinal Matrix	brain
41	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:96251600-96255200	Strong transcription	NH-A	brain
43	chr13:96251600-96255600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr13:96251600-96255800	Strong transcription	Osteobl	bone
45	chr13:96252000-96254200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr13:96252000-96255000	Strong transcription	Ovary	ovary
47	chr13:96252000-96255600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:96252000-96258000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:96252000-96259000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr13:96252200-96253800	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links