Variant report

Variant	rs8001332
Chromosome Location	chr13:96215982-96215983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96212339..96214130-chr13:96214370..96217172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134873	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1000601	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1952107	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs4771920	0.88[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4771921	0.89[EUR][1000 genomes]
rs4773919	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59483123	0.91[EUR][1000 genomes]
rs72651928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7324901	1.00[YRI][hapmap]
rs7995795	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9516600	0.86[EUR][1000 genomes]
rs9516601	0.87[EUR][1000 genomes]
rs9516602	0.89[EUR][1000 genomes]
rs9525011	0.83[EUR][1000 genomes]
rs9525016	0.84[EUR][1000 genomes]
rs9525017	0.80[CEU][hapmap];0.80[CHD][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs9525018	0.85[EUR][1000 genomes]
rs9525019	0.87[EUR][1000 genomes]
rs9525020	0.87[EUR][1000 genomes]
rs9525025	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9525026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9525028	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9525029	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9525030	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9525032	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8001332	FARP1	cis	cerebellum	SCAN
rs8001332	CLDN10	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96207000-96216800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:96207200-96216600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:96211000-96220600	Weak transcription	Pancreas	Pancrea
9	chr13:96212400-96231000	Weak transcription	Fetal Kidney	kidney
10	chr13:96213200-96220600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr13:96215200-96216400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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