Variant report

Variant	rs9525029
Chromosome Location	chr13:96247827-96247828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1000601	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1952107	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs4771920	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs4771921	0.89[EUR][1000 genomes]
rs4773919	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59483123	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72651928	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7324901	1.00[YRI][hapmap]
rs7995795	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8001332	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516600	0.86[EUR][1000 genomes]
rs9516601	0.87[EUR][1000 genomes]
rs9516602	0.89[EUR][1000 genomes]
rs9525011	0.83[EUR][1000 genomes]
rs9525016	0.84[EUR][1000 genomes]
rs9525017	0.86[EUR][1000 genomes]
rs9525018	0.85[EUR][1000 genomes]
rs9525019	0.87[EUR][1000 genomes]
rs9525020	0.87[EUR][1000 genomes]
rs9525025	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9525026	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525028	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525030	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525032	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:96224400-96248000	Weak transcription	Esophagus	oesophagus
3	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:96229000-96256200	Weak transcription	Gastric	stomach
5	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
6	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
7	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
11	chr13:96235400-96253400	Weak transcription	Left Ventricle	heart
12	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:96238000-96256400	Weak transcription	Placenta	Placenta
14	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
15	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr13:96240000-96252200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr13:96240000-96252400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:96240000-96253600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
20	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr13:96240200-96249200	Weak transcription	NHLF	lung
23	chr13:96240200-96252200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:96240200-96252200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:96240200-96252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:96240200-96253400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr13:96240200-96255800	Weak transcription	Fetal Intestine Large	intestine
28	chr13:96240200-96256000	Weak transcription	Fetal Intestine Small	intestine
29	chr13:96240200-96256200	Weak transcription	Aorta	Aorta
30	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
31	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
32	chr13:96243000-96248000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr13:96243000-96252200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:96243000-96253600	Weak transcription	HSMMtube	muscle
35	chr13:96243000-96253800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr13:96243200-96249200	Weak transcription	Pancreas	Pancrea
37	chr13:96243200-96250800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr13:96243200-96252000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:96243200-96252000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr13:96243200-96252200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr13:96243200-96252200	Weak transcription	Brain Anterior Caudate	brain
42	chr13:96243200-96252200	Weak transcription	Fetal Brain Female	brain
43	chr13:96243200-96253400	Weak transcription	HUVEC	blood vessel
44	chr13:96243200-96256200	Weak transcription	Fetal Brain Male	brain
45	chr13:96243400-96252000	Weak transcription	Fetal Muscle Leg	muscle
46	chr13:96243800-96249400	Weak transcription	HepG2	liver
47	chr13:96243800-96249800	Weak transcription	Fetal Stomach	stomach
48	chr13:96243800-96252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:96245400-96249000	Weak transcription	Ovary	ovary
50	chr13:96245400-96254400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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