Variant report

Variant	rs9525016
Chromosome Location	chr13:96193271-96193272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000601	0.83[EUR][1000 genomes]
rs1952107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4771920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4771921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4773919	0.84[EUR][1000 genomes]
rs59483123	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72651928	0.83[EUR][1000 genomes]
rs7995795	0.83[EUR][1000 genomes]
rs8001332	0.84[EUR][1000 genomes]
rs9516600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516601	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516602	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9525011	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9525017	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525018	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525019	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525020	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9525025	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9525026	0.83[EUR][1000 genomes]
rs9525028	0.84[EUR][1000 genomes]
rs9525029	0.84[EUR][1000 genomes]
rs9525030	0.83[EUR][1000 genomes]
rs9525032	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix
3	chr13:96189600-96198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:96189800-96199000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:96192600-96194600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:96192600-96194600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:96192600-96194600	Enhancers	Pancreas	Pancrea
8	chr13:96192600-96195000	Enhancers	Fetal Muscle Leg	muscle
9	chr13:96192800-96193800	Enhancers	Adipose Nuclei	Adipose
10	chr13:96192800-96194200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:96192800-96194400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr13:96192800-96194400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:96192800-96194600	Enhancers	Fetal Heart	heart
14	chr13:96193000-96193600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:96193000-96193600	Enhancers	Brain Germinal Matrix	brain
16	chr13:96193000-96193800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr13:96193000-96194000	Enhancers	Fetal Kidney	kidney
18	chr13:96193000-96194200	Enhancers	A549	lung
19	chr13:96193000-96194400	Enhancers	HSMM	muscle
20	chr13:96193200-96193400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:96193200-96193400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr13:96193200-96193400	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr13:96193200-96193400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr13:96193200-96193400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr13:96193200-96193400	Enhancers	HSMMtube	muscle
26	chr13:96193200-96193600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:96193200-96193600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr13:96193200-96193600	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr13:96193200-96193600	Enhancers	Esophagus	oesophagus
30	chr13:96193200-96193800	Enhancers	Brain Anterior Caudate	brain
31	chr13:96193200-96194000	Enhancers	Brain Angular Gyrus	brain
32	chr13:96193200-96194000	Enhancers	Fetal Lung	lung
33	chr13:96193200-96194600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr13:96193200-96194600	Enhancers	Primary hematopoietic stem cells	blood
35	chr13:96193200-96194600	Enhancers	Psoas Muscle	Psoas
36	chr13:96193200-96194600	Enhancers	HUVEC	blood vessel

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